Nyctereutes procyonoides (raccoon dog): 129513797
Help
Entry
129513797 CDS
T09008
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
npo
Nyctereutes procyonoides (raccoon dog)
Pathway
npo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129513797 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npo03019
]
129513797 (MTREX)
03041 Spliceosome [BR:
npo03041
]
129513797 (MTREX)
03009 Ribosome biogenesis [BR:
npo03009
]
129513797 (MTREX)
03016 Transfer RNA biogenesis [BR:
npo03016
]
129513797 (MTREX)
Enzymes [BR:
npo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129513797 (MTREX)
Messenger RNA biogenesis [BR:
npo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129513797 (MTREX)
Spliceosome [BR:
npo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129513797 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
129513797 (MTREX)
Ribosome biogenesis [BR:
npo03009
]
Eukaryotic type
Pre-60S particles
Helicases
129513797 (MTREX)
Transfer RNA biogenesis [BR:
npo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129513797 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
129513797
NCBI-ProteinID:
XP_055188105
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTASGTKKDKEKEAGKWKGPPGSAEKGGKRFDGKLQSESTNIG
KTKRDADFEGTDEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLN
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggatgaactcttcagcgtgttcgaggacgactcgaccaccgcg
tccggaactaaaaaagacaaggagaaagaggcggggaaatggaaggggccgccgggatct
gcggaaaagggcgggaaacgttttgatggtaaattgcagtctgagtcaactaatattgga
aaaaccaagagagatgcagattttgagggcacagatgaacccatttttggaaagaagcct
agggtggaagaatcaataactgaagatttaagtttggcagacttgatgcccagagtcaag
gtacagtccgttgaaactgttgaagggtgtacacatgaggttgcgcttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgagtatgccattgcattagccttaagg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaaccagaaataccgg
gaaatgtatgaagaatttcaagatgttggtttgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttaagaagtatgctgtacagaggttct
gaagttatgcgagaagtagcgtgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattctgcttcctgacaatgtccactatgtg
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgtcatgtaatttacacagattaccggcctactccgttgcagcactacatt
tttccagcagggggagatggcctgcaccttgttgttgatgaaaatggtgacttcagagaa
gataattttaatactgcgatgcaagtacttcgagatgcaggtgatttggcaaaaggagat
cagaaggggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcagcctgtaattattttcagttttagtaagaaggattgtgaa
gcctatgcacttcagatgaccaaattagattttaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgccattgactgcttgtctgatgaagataaaaaactccctcag
gttgaacatgtacttcctcttttgaagcgagggattggtattcaccatggtggtctactt
cctattttgaaagaaactatagaaattctattttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagctagaactgttttatttacaaat
gcccggaaatttgatgggaaagatttcagatggatttcctctggtgaatacattcagatg
tctggtcgggctggaaggaggggaatggatgatagaggaattgtaattcttatggtggat
gaaaagatgagcccaacgattggaaaacagctacttaagggctcagctgatcctctaaat
agtgcttttcatttgacctacaacatggttttgaatttactacgtgtagaagaaattaat
cctgagtacatgttggaaaaatccttttaccagtttcagcattatagagcaattccagga
gtagtagagaaagtaaaaaactcagaagaacaatataataaaatagtaataccaaatgag
gaaagtgtcgtcatctattataagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatatattcacaaaccaaaatactgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagttgaagtacttctg
cgctgcagcaaagaaagtttgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgaaaaaggagagatgcaggttgttccagtgttggtgcacctcctgtctgctatcagc
agtgttaggctttacattcctaaagacctccggccagtggataatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcctttattagatcctatt
gatgatatgggcattcaggatcaaggactgaaaaaagtcatccagaaagtagaggctttt
gagcatagaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactaaag
aaagcaagaactgtcctgcaaatggatgagctcaaatgtcgcaaacgtgttttaagaagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgaactccttctaactgagatgatgtttaatggccttttcaatgacctg
tctgcagaacaggcaacggcactcctgagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaactggaaattgatgaggaaacttacctaaac
tcattcaaacctcacttaatggatgtagtatatacctgggcaacgggcgctacatttgcc
catatctgcaaaatgacagatgtcttcgaaggcagcataattcgttgtatgaggcgccta
gaagaactgcttcgacagatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aacaaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
DBGET
integrated database retrieval system
