Nyctereutes procyonoides (raccoon dog): 129516957
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Entry
129516957 CDS
T09008
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
npo
Nyctereutes procyonoides (raccoon dog)
Brite
KEGG Orthology (KO) [BR:
npo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npo03019
]
129516957
Enzymes [BR:
npo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129516957
Messenger RNA biogenesis [BR:
npo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
129516957
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Abhydrolase_11
Motif
Other DBs
NCBI-GeneID:
129516957
NCBI-ProteinID:
XP_055192528
LinkDB
All DBs
Position
Unknown
AA seq
1708 aa
AA seq
DB search
MGLEEHMMILEKMSELLMNAVPKAQYSSLFNDFVESEFFLIDGDSLLTTCICEKSLKXGQ
ELHFFYLVEGYLMDLVSKGGQFAVVFFKDAECAYFSFPELLPLRAALILHLQHNTTIDVR
TFSGCLSREWEIFLEESSPYYLIVADEGLNHLQTHLFSFLVTQSWAMKVNVVLSSGQTSD
VLRLYAYLMPSTYKKQKFFKENEKEIENAYKALIKHLEKCRILALESLFGNLKWKNMMEE
ACETISLLKQFWPEGSDIRRVLCVTSCSLSLRMYHHFLENRMKTSSDQKTNIQEVESNCL
TLQEMEDLCKLHCLSVVFLLHLPLSQRACARFITSHWTKNVQTSLRMKKWCEYFILSNMN
IFEFWNLNLIHLSDLNDELLLKNIAFYYENENVEGLHLNLGDVIMKDYEHLWNTVSRLVR
KFTVGKPFPLRTTELSFLEKNSSPIKDTFKKKVPNLGFISMSSEVVDKFVGDLLKDFPFL
KSDDPIVTSLVKQKEFDELVHWHSHRPLSDDYDRTRCQFDEKSRDPRHLRNVQKYHAFQQ
YYGNSLESVSPKLIVTQAVKPKSNFSAPKNKKTHETKAEVIARENKKRLFAKEEEKEEKK
WNALSFSIEEEMKENLNSGINNLEDFLKSCKSNSVKYRVEMVALNACLKAWKEHCQGETA
KDLNIAVQMMKRIYSLVEKYPELLQEADQQLIARCLKYLGFAELASSFYPTQVAEDDIKK
KTDKYSVGMGPVRFQLQYMGHYLIRDERKDPDPRVQNFIPDTWQRELLDVVDNNESAVIV
APTSSGKTYASYYCMEKVLKESNEGVVVYVAPTKALVNQVAATVHNRFTKSLPNGEALCG
VFTRDYRHDALNCQVLITVPACFEILLLAPHRQAWVKRIRYVIFDEVHCLGGEIGAEVWE
HLLVMIRCPFLALSATISNPEHLTEWLQSVKSYWKQEDKTMRENTAFKRNAGRCTKAPKD
YFQVKESYKVRLVLYGERYNDLEKHICSIKHRDVCFDHFHPCAALTTDHIEKYGFPCDLT
LSPRETVQLYDTMLQFWESWPRAQELDPEKFIHFKDKIVIRKLDARKYEESLKAELTSWV
KNGHAEEAKTVLKNLCPDSVFSSENTVSMFPLLVEKLRKMEKLPALFFLFNLGDVEGRAA
SLRNFLVRKQAINRPPKADKEAHDVINKIRKIKKSIERQKTIDERSQKNLRKMDQKLIHE
AEHNNLLKILEKNLEIPEECTYANQKAIDAETLQMVFDRVKFTRKGAELKALARRGIGYH
HSSLSFKDKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSIYLDALSYRQMSG
RAGRRGQDLMGDVYFFGIPLPKIEKLIKSNVPELRGQFPLGITLVLRLMLLASKADDPED
AKAKVLSVLKHSLLSFKQPRITELLKLYFLFSFQFLVKQGYLDQEGKPRGFAGLVSHLHY
HEPSNFVFVSFLLKGLFHNLCQPTRKGSKHFSQDVMEKLVLVLANLFGRRILPAKFQETT
IKFYQSKVFLEDLPEDFNDALHEYNMNVTKEFASFLLNVAKLADMKQEYQLPLSKINFTG
KECEDSELVSHLMSCKEGRVAISPFVCLSGNSDSDLLQPNTPNHVVLRTIGIDHSRAPVL
WSQTFDNQGRRMPLDAYALDFYKHGSLTGLVQDNRLHEGAAYDLLKDFALTIKSISVSLR
ELCEDEDDNVVLAFEQLSKSFSEKLDEV
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgggtttagaagagcacatgatgattttagagaaaatgtcagagctgcttatgaacgca
gtgccaaaagctcaatattccagtctgttcaatgattttgttgaatctgaattttttctg
attgacggagattcattacttactacatgcatatgtgagaaatcattaaagncagggcag
gagctccacttcttttatctggttgaaggctatctcatggatcttgtcagtaaaggagga
caatttgccgtagttttcttcaaggatgcggagtgtgcatatttcagcttccctgaactt
cttcctttgagagctgctttaatccttcatcttcagcataatacgaccatcgacgtccga
acgttttctggatgcctatcacgagagtgggaaattttcttggaagagagttccccatat
tacctgatagttgcggatgaaggcctgaaccatctacaaacacaccttttcagcttttta
gttactcagtcttgggcaatgaaggtcaacgttgtgctctcctcggggcaaacatctgat
gtccttcgactttatgcataccttatgccaagcacgtacaaaaaacaaaaatttttcaaa
gagaatgaaaaggagattgagaatgcttataaagccctgattaaacatttggaaaaatgt
cgaattttagcactggaatctctttttggaaatttaaaatggaaaaatatgatggaagag
gcatgtgaaactatttctctgcttaagcaattctggccagaaggatctgacattcgacgt
gttctttgtgttacttcatgctcattgtctttgagaatgtatcatcactttttagaaaac
agaatgaagactagctctgatcagaaaactaacatccaagaggtggaaagtaattgctta
accctgcaagagatggaagatttgtgtaaactgcattgtctcagtgtggtctttctactt
cacttacctctttctcaaagagcctgtgctagattcatcacttcccactggaccaagaac
gttcagacttccttaagaatgaaaaagtggtgtgaatatttcatcttaagtaatatgaat
atttttgaattttggaatctgaatttaattcacctttcagacttaaatgatgagcttttg
ttgaagaatattgctttttactatgaaaatgaaaatgttgaaggcctacatttgaatttg
ggagatgtcattatgaaagattatgaacatctctggaatactgtgtcaaggttggtcaga
aagttcactgttggaaagccatttcctctgagaacaacggaactttcttttcttgagaag
aattcatcaccaatcaaagatactttcaagaaaaaggttcctaatttgggatttatttca
atgtcatctgaagtggttgataagttcgttggcgaccttttgaaagatttccctttcttg
aagagtgatgatcctattgtaacttcactagttaaacaaaaggaatttgatgagcttgtg
cactggcattctcacagaccccttagtgatgactatgacaggacaaggtgtcaattcgat
gaaaaatctagagatcctcgtcatcttaggaacgtgcagaagtatcatgcttttcagcaa
tattatgggaattcattagaatcagtctctccaaaactcattgtaactcaagctgtaaag
ccaaagagtaatttcagtgcacccaagaacaaaaagacacatgaaaccaaggctgaagta
attgctagagagaataaaaagaggttatttgctaaggaagaagaaaaagaggagaaaaaa
tggaatgctctgtcattttctattgaggaggaaatgaaagagaacttaaactctggaata
aacaacctggaagattttttgaaatcatgtaaaagtaactccgtgaaataccgagttgaa
atggtagcgttgaatgcctgcttgaaagcatggaaagaacattgccaaggtgaaaccgcg
aaagatttaaacatagctgttcaaatgatgaaaaggatctattccttggtggaaaaatac
ccggaacttttgcaggaggcagatcagcagctcatagccagatgcctgaagtatttagga
tttgctgagttggcaagttctttctatccaacccaggtcgcagaagatgacataaagaag
aaaacagataaatactcagttggcatggggccagttcggtttcaactacaatacatgggt
cattacttgatacgagatgagagaaaagatccagatcccagagttcagaattttattcct
gacacatggcagcgagagctccttgatgttgtggataataatgagtctgcggtgatcgtt
gccccgacgtcctcgggcaagacctatgcttcctactactgcatggagaaggtgctgaag
gagagcaacgaaggggtggtcgtgtatgtcgcaccaacaaaggcccttgttaatcaagtg
gcagcaactgttcataatcgttttaccaaaagtctgccaaatggtgaagctctatgtggt
gtttttacaagggattatcgtcatgacgccttaaactgtcaggtacttattacagtgcct
gcctgctttgaaattctgctattagctcctcatcgccaagcatgggtgaaaaggatcaga
tatgttatatttgatgaggtccattgtcttggtggagaaattggagcagaagtctgggag
catctccttgtcatgatccgatgtccctttctggccctttcagctactataagtaaccct
gagcatctcactgagtggctgcaatcagtgaaaagctactggaaacaagaagacaagaca
atgagagaaaatactgcttttaaaagaaacgctggccgttgcaccaaggctcccaaagat
tacttccaagtaaaggaatcctataaagttagacttgtgctctatggagagagatacaac
gatttagagaagcacatatgttccataaaacatcgcgacgtttgcttcgaccactttcac
ccatgtgccgcgctaacaacggatcacatcgaaaagtacggattcccttgtgacctgacc
ctttcccctcgagaaacggtccagctttatgataccatgcttcagttttgggagagctgg
cccagggcccaggagttggatccggagaaattcattcattttaaggataaaatagtcatt
agaaagttggatgccagaaaatacgaagagagcttaaaggcagaattaaccagttgggtt
aaaaatggccatgccgaggaggccaaaacagttctgaagaatctttgtcctgattcagtt
tttagttcagaaaacacagtcagcatgtttccacttctcgttgaaaagctaaggaaaatg
gaaaagttaccagcattgttttttttattcaacttaggagatgtagaaggaagggctgcc
agcttgaggaatttcctggtgcgaaaacaagcaataaatagacctcccaaagctgataaa
gaggcccatgacgtgattaacaaaattcgaaaaatcaaaaaatccatcgagagacaaaag
acaatagacgagagaagccagaaaaatctcagaaaaatggatcaaaagctaatacatgaa
gctgaacataataatctactcaagattctagagaagaacctggaaatccctgaggagtgc
acatatgctaatcaaaaagcgatagacgctgagactttgcagatggtgtttgatcgagta
aaattcacaagaaaaggtgcagagctgaaggctttggcaagaaggggtattggatatcat
cacagctctttaagcttcaaagacaaacagttagttgagattctttttaggaaaggattt
attagggtggtgacagctaccgggacactggctttaggaatcaatatgccctgtaaatcc
gtggtttttgctcagaactccatctacctggatgccctcagttacagacagatgtctgga
cgagccgggagacgaggtcaagacctgatgggagatgtatatttctttggtattccattg
cccaaaatagaaaaactcattaaatccaacgttcctgaactgagaggacagttccctctg
ggcatcaccctggtcctgcgactcatgctgctggcttccaaggcagacgacccagaggat
gctaaagccaaggtgctgtccgtgctaaagcattcgttgctgtccttcaagcaacccaga
atcacggagctattgaaactttacttcttgttttctttccaattccttgtgaaacagggc
tatttagatcaagaaggtaaaccaagggggtttgctggcctcgtatcacatctgcattac
catgagccttctaattttgttttcgtcagttttctcctaaaaggccttttccataatctc
tgtcagccaactaggaaaggttcaaaacatttttctcaagatgttatggaaaagctagtg
ttagtattggccaatctgtttggaagaagaattcttccagcaaagtttcaggaaactact
atcaagttttatcaatcaaaggtgttccttgaggatctcccggaggattttaatgatgct
ttacatgagtataacatgaatgttacaaaggaatttgcctccttcctactaaatgttgcc
aaattggctgatatgaaacaggaatatcaactcccattgtcaaaaataaatttcacagga
aaggaatgtgaggactctgaacttgtgtctcacttgatgagctgcaaagaaggaagagta
gcaatttctccatttgtttgtctctctggaaactctgatagtgatttgcttcaaccaaat
actccaaaccatgtggttctgcgcacaattggcatcgatcacagtcgggctcctgtgctg
tggtcacagacatttgacaaccaagggagaagaatgccactcgatgcttatgcacttgat
ttctacaaacatggctccttgactggactagtccaggacaacaggctacatgaaggagct
gcatatgacttgttgaaagattttgcacttaccattaaatctatcagtgtgtccttgcgt
gaactatgtgaagatgaagacgacaacgtggtcttagcatttgaacaattgagtaaaagc
ttttctgaaaaacttgatgaagtttaa
DBGET
integrated database retrieval system
