Novosphingobium sp. PP1Y: PP1Y_AT11301
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Entry
PP1Y_AT11301 CDS
T01515
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
npp
Novosphingobium sp. PP1Y
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
npp03016
]
PP1Y_AT11301
Enzymes [BR:
npp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
PP1Y_AT11301
Transfer RNA biogenesis [BR:
npp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PP1Y_AT11301
Prokaryotic type
PP1Y_AT11301
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
CCA92055
UniProt:
F6IKV3
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All DBs
Position
1213325..1214236
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AA seq
303 aa
AA seq
DB search
MPHGWIILDKPHGLGSTQGVAAVKRNLREAGYGKKVKVGHGGTLDPLATGILPIAVGEAT
KLTGRMLDASKAYAFTVRFGEETTTLDLEGEVVSRSDVVPTRDLVSAVLPRFTGPIEQVP
PAYSALKVDGERAYDLARAGQDVALKSRAVTIHALSLCDPEGEAANEATFLAHVSKGTYI
RSLARDIARALGSCGTVTMLRRVKAGPFDLSQAISLDKLNEIGKGAPLEQILLPLEVGLD
DIPAIDLGPEQARAVRQGRVLTGLPHEDGLHWAREGIVPVALMELSGGEARVVRGFNLSD
VAE
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgccgcacggctggatcattctcgacaagccgcatgggctcggctcgacccagggcgtg
gccgccgtcaagcgcaacttgcgcgaggcaggctatggcaagaaggtcaaggtcggccac
ggcggcaccctcgatccgctggcgaccggcatcctgccgatcgccgttggcgaggcgacc
aagctgaccgggcgcatgctcgacgccagcaaggcatatgccttcaccgtccgcttcggt
gaggagaccacgacgctcgatctcgaaggcgaagtcgtctcgcgcagcgatgtcgtgccc
acgcgcgatctggtgtcagcggtactgccgcgcttcaccggcccgatcgagcaggtgcct
ccggcctattcggcgctgaaggtcgacggtgagcgcgcctatgaccttgcccgtgccggg
caggacgtcgcgctcaagtcccgtgcagtgacgatccatgcgctgtcgctgtgcgatccc
gagggtgaagcggcgaatgaggcgacatttctggcccacgtatccaaggggacctacatc
cggtcgctggcgcgcgacattgcccgggctctgggtagctgcggcacggtgaccatgctg
cgccgcgtcaaggccggtccgttcgacctgtctcaggcgatttcgctggacaaattgaac
gaaatcggtaagggcgcccctcttgaacagatactcttgccactggaggtggggctggac
gacatcccggccatcgacctcggtccggagcaggcaagggcggtccgacagggccgcgtt
ctgaccgggctgccccatgaagacgggctgcattgggcgcgagaaggaattgttccggtc
gcgttgatggagctttcgggcggtgaagcccgcgtcgtcagggggttcaatctttcggat
gtcgcggagtag
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