Novosphingobium sp. PP1Y: PP1Y_AT11318
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Entry
PP1Y_AT11318 CDS
T01515
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP1Y_AT11318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npp03019
]
PP1Y_AT11318
03016 Transfer RNA biogenesis [BR:
npp03016
]
PP1Y_AT11318
Enzymes [BR:
npp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PP1Y_AT11318
Messenger RNA biogenesis [BR:
npp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PP1Y_AT11318
Transfer RNA biogenesis [BR:
npp03016
]
Prokaryotic type
tRNA degradation factors
PP1Y_AT11318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
Phage_connect_1
Toxin_trans
DUF2152
Motif
Other DBs
NCBI-ProteinID:
CCA92057
UniProt:
F6IKV5
LinkDB
All DBs
Position
1214691..1216976
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AA seq
761 aa
AA seq
DB search
MFDVKTVSMEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINCIAQVLSY
DGETEPDVVAMIAASAALTISGVPFMGPIGACRVGFVDGQYTLNPKQEAALADGRLDLVV
AATGDAVMMVESEAKELTEEEMLGAVMFAHDECKKVVNLIIDLAEQAAKEPWEIDLSDNT
ADIKAKLKEVVGKDVAAAYKLTDKSARSNALNAARAKAKEAFADAEPQTQMVAIKTMKKV
EAEIVRGAILKDGQRIDGRKLDQVRPIESMVGFLPRTHGSALFTRGETQTICTTTLGTKD
SEQMIDGLEGLSYSAFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKED
FPYTIRVLSDVTESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFAVLSD
ILGDEDHLGDMDFKVAGTENGITTMQMDIKIAGITKEIMGKALEQAKAGRAHILGEMTKA
LGSARTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKISSS
DLDQIEAAKNWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVE
KPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEELEDTRPPREPRGDREGGGRGG
DRRGPRREGGGGRGRDRGPRRDRDDNGGGDPNHMPAFLKED
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtcaaaaccgtatcgatggagtggggcggaaagaccctcactctggaaacc
ggccgtattgcccgtcaggccgacggcgcggtcctcgccacttatggcgaaactgttgtg
ctctgcgcggttactgccgccaagtcggtgaaggaaggccaggacttcttcccgctgacc
gtgcactaccaggaaaagttctccgccgccggtcgtatcccgggcggcttcttcaagcgt
gagcgcggcgcgaccgaaaaggaaacgctgaccagccgtctgatcgaccgcccggttcgc
ccgctgttccccgaaggcttctacaacgagatcaactgcatcgcgcaggtcctcagctat
gatggcgagaccgagcccgacgtcgttgcgatgatcgccgcttcggccgcgctgaccatt
tcgggcgtgcccttcatgggtccgatcggcgcctgccgcgtcggcttcgtcgatggccag
tacacgctgaacccgaagcaggaagccgcgctggccgatggccgcctcgacctcgtcgtt
gccgctaccggcgatgccgtgatgatggtggaatcggaagccaaggagctgaccgaggaa
gaaatgctcggcgccgtcatgttcgcgcatgacgagtgcaagaaggtcgtgaacctcatc
atcgacctcgccgaacaggccgccaaggagccttgggaaatcgacctgtcggacaacacg
gccgacatcaaggcgaagctcaaggaagtcgtcggcaaggacgttgccgccgcctacaag
ctgaccgacaagtcggctcgctcgaacgcgctcaacgcagcgcgcgccaaggcgaaggaa
gctttcgccgacgccgagccgcagacccagatggtcgcgatcaagaccatgaagaaggtc
gaagccgaaatcgttcgcggcgccatcctcaaggacggccagcgcatcgacggacgcaag
ctcgaccaggtccgcccgatcgaatcgatggtcggcttcctgccgcgcacccatggttcg
gccctgttcacccgcggtgaaacgcagaccatctgcaccaccaccctgggtaccaaggat
tccgagcagatgatcgacggcctcgaaggcctgtcgtactcggcgttcatgctgcactac
aacttcccgccctattcggtcggcgaagtcggccgcttcggcgccccgggccgccgcgaa
gtcggccacggcaagctggcgtggcgtgcgctgcacccggtcctgcccgccaaggaggac
ttcccctacaccatccgcgtcctttcggacgtgaccgagtcgaacggctcgtcttcgatg
gcgaccgtctgtggcggctgtctctcaatgatggacgcaggcgttccgatcgagcgcccc
gtttcgggcatcgcgatgggcctcatcctcgaaggcgacgatttcgctgtcctttcggac
attctgggcgacgaggatcacctcggcgacatggacttcaaggtggctggcaccgagaac
ggcatcaccacgatgcagatggacatcaagatcgccggcatcaccaaggaaatcatgggc
aaggcgctggagcaggcgaaggccggccgcgcgcacatcctgggtgaaatgaccaaggct
ctcggctcggcccgcaccgagctgtcggcccacgcgccgcgcatcgagacgatccagatc
gacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtcatccgcgagatcgtc
gccgaaaccggcgccaaggtcgacatcgacgacgaaggcgtgatcaagatctcgtcctcg
gatctcgaccagatcgaggccgccaagaactggatcctcggcatcgtcgaggaagcggaa
gtcggcaagatctacaccggcaaggtcgtcaacatcgtcgacttcggcgctttcgtgaac
ttcatgggtggcaaggacggcctcgtccacgtttccgaaatgaagaacgagcgcgtggaa
aagccgactgacgtcgtgtcggaaggccaggaagtgaaggtcaaggtcctcgagatcgac
aaccgcggcaaggtccgcctgtcgatgcgcgtcgtcgaccaggaaaccggtgaagagctg
gaggacacccgtccgccccgcgaaccgcgcggcgaccgtgaaggcggcggccgtggtggc
gatcgccgtggtccgcgtcgcgaaggcggtggtggccgcggccgcgaccgtggcccgcgc
cgcgatcgtgacgacaacggcggtggcgatcccaaccacatgccggccttcctcaaggaa
gactga
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