Novosphingobium sp. PP1Y: PP1Y_AT13273
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Entry
PP1Y_AT13273 CDS
T01515
Name
(GenBank) uracil-DNA glycosylase superfamily protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PP1Y_AT13273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npp03400
]
PP1Y_AT13273
Enzymes [BR:
npp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
PP1Y_AT13273
DNA repair and recombination proteins [BR:
npp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PP1Y_AT13273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
CCA92222
UniProt:
F6ILC0
LinkDB
All DBs
Position
complement(1408665..1410098)
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AA seq
477 aa
AA seq
DB search
MIGARLGDPDDFDAWRDMARSFITRGIPPEKIAWSEGEDNADLFSFTEDAAPHPSSLPEP
SPTPVRASTAFLSLATSVFRHSDPARLDLLYRTLWRLQKHPRLIEDTTDADVANLRRLAQ
QVRRDIHKMRAFLRFRQIEGNAGTERYIAWFEPEYRIELANARFFVERFANQRWSILTPR
LSLHWDGTTLARGPAASRAQAPADDAAEDLWRGYYRSIFNPARLKTKAMIKEMPRRYWHN
LPEAREIAALISSAQRRETSMLAQGRELFAELRPVDLPSLAEGIAHCRRCQIGCNGTAAV
PGEGFTGARLMIVGEQPGDNEELAGRPFVGPAGKLLNAHLAAAGIDRQGAYVTNAVKHFK
FAARGKQRLHQNPTAREIDTCRWWLDTERALVQPRIVLALGASAARALTGRTPSIGRERG
RMLQLPDGVPLLLTVHPSYLLRLDGPAREREEARFASDLAALAIHLRDPAVRDSQSA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgatcggcgccaggctgggcgatcctgacgatttcgacgcctggcgcgacatggcccgc
tccttcattacgcgcggtatccccccagagaagatcgcctggagcgaaggcgaggacaac
gccgacctgttttccttcaccgaagatgccgcgccgcatccttccagccttcccgaacca
tcgccaactccggtgcgcgcatcgactgcctttctcagcctggcgaccagtgtcttcagg
cacagcgatccggcgcggctcgatctgctctatcgcacgctatggcggttgcagaagcac
ccacggctgatcgaggacaccaccgatgccgacgttgcgaacctgcgccgtcttgcccag
caggtccgccgtgacatccacaagatgcgcgctttcctgcgttttcgccaaatcgagggc
aatgcgggcacagagcgctatatcgcgtggttcgagccggagtatcgcatcgaacttgcc
aacgcgcgcttcttcgtcgagcggttcgccaatcagcgttggtccatcctcaccccgcga
ctgagcttgcattgggacggtacgacactggcacgaggccctgcagcctcgcgcgcgcag
gctcctgccgacgatgccgcggaggacctatggcgcggttactaccggtcgatcttcaac
ccggcgcgcctcaagaccaaggccatgatcaaggagatgccgcgccgttactggcacaac
ctgcccgaggcccgcgaaattgccgcactgatctccagtgcgcaaagacgcgagacttcc
atgcttgcgcaaggtcgcgaactctttgccgaattgcgccccgtcgacctcccttcgctt
gccgaggggatcgcgcactgtcggcgttgccagatcggctgcaacggcactgcggcagtt
cccggcgaaggcttcaccggcgcccgactgatgatcgtgggcgaacagcccggcgacaac
gaggaattggccgggcgcccgttcgtcggtcctgccggaaagctactgaacgcccatctt
gccgccgccggaattgacaggcagggggcctacgtcaccaatgcagtcaagcatttcaaa
tttgccgcgcgggggaaacagcgtctgcaccagaacccgaccgcgcgggaaatcgacacc
tgccgctggtggctggatacggagcgcgcactggttcagccgcgcatcgtcctcgcgctt
ggtgccagtgccgcccgcgccctgaccggacgcacgccgtcgatcggccgcgaacgtggg
cgcatgctgcagctgcccgacggcgtccccctcctgctgacggtacaccccagctacctg
ctgcggctcgacggcccggcgcgcgaacgcgaggaagcacgctttgcatcggacctcgca
gcgctagccatacaccttcgcgatccggcagttcgcgacagccaatcagcctag
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