Novosphingobium sp. PP1Y: PP1Y_AT14413
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Entry
PP1Y_AT14413 CDS
T01515
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
npp
Novosphingobium sp. PP1Y
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
npp03016
]
PP1Y_AT14413
Enzymes [BR:
npp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PP1Y_AT14413
Transfer RNA biogenesis [BR:
npp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PP1Y_AT14413
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
CCA92343
UniProt:
F6ILP1
LinkDB
All DBs
Position
complement(1531253..1532497)
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AA seq
414 aa
AA seq
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MIIHPLITQTEDLAALCERLAKSDFVSVDTEFMRENTYWPELCLVQIANTEEAAAIDPMA
EGLDLSPLLDLLTDNEEVLKVFHAGGQDVEIIFNATGRTPHPIFDTQIAMMAISQSEQIG
YSNLVESWLGLTIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPKILKRLIKTGRGA
WLNQEMEKLADPDNYRNDPTQAWKRIKAAGRNPAMLGRLKAIAEWREHEAQGKNIPRGRI
ARDETLADLANHPPKQQSDLAKVRGLSQGWKDNEIGKRLMATIAKAQPLPDDEMPPRAPR
GAPLGKEGALVADLLKLLVKIRAREIDVAARLLTRSDELELLAAGVRKNLPILQGWRYEV
FGKDALDLVEGKLAFAVENGRLKMTHVDDEVPQEAAAETGEMATAEDEGGQATG
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgatcattcatccgctcataacccagaccgaagatctcgctgccctgtgtgaacgactg
gcaaaatccgatttcgtcagcgtcgacaccgaattcatgcgcgagaacacctattggccc
gaactctgcctcgtgcagatcgccaatacggaggaagctgccgcgatagatccgatggcc
gaaggcctcgacctgtcgccgctgctcgacctgctgaccgacaacgaggaagtcctgaag
gtcttccacgccggcggccaggacgtcgagatcatcttcaacgccaccggtcgcaccccg
cacccgatcttcgacacccagatcgcgatgatggcgatcagccagtcggagcagatcggc
tattccaacctcgtcgaatcctggctcggcctgacgatcgacaagggcgcgcgcttcacc
gactggtcgcgccgcccgctcaccgagcggcagatcgaatatgccatcggcgacgtcacc
cacctttccaagatcttcccgaagatcctcaagcgcctgatcaagaccgggcgcggggcc
tggctcaatcaggaaatggaaaagctcgccgatccggacaattaccgcaacgatcccacc
caggcctggaagcggatcaaggcggcagggcgcaacccggccatgctcggccgcctcaag
gcgatcgccgaatggcgcgagcatgaagcgcagggcaagaacatcccgcgcggccgcatc
gcccgcgacgaaaccctcgccgacctggccaaccacccgcccaagcagcagtcggacctc
gccaaggtgcgcggcctgtcgcaaggctggaaggacaacgaaatcggcaagcgcctgatg
gcaactatcgccaaggcccagccgcttcccgacgacgagatgccgccgcgcgcaccgcgc
ggggctcctctcggcaaggaaggcgccctcgtggcagacctgctcaagctgctggtcaag
atccgcgcgcgcgagatcgacgtggccgcccgcctgcttacacgcagcgatgaactcgaa
ctgctcgcagcgggcgtccgcaagaacctgccgatcctgcagggctggcgctacgaggtc
ttcggcaaggatgcactggacctggtagagggcaagctggccttcgcggtcgagaacggc
aggctcaagatgacccatgtcgatgacgaggtaccgcaggaagcggccgcggaaaccggc
gagatggcgacagcggaggacgaaggcggccaggccaccggatga
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