Novosphingobium sp. PP1Y: PP1Y_AT2071
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Entry
PP1Y_AT2071 CDS
T01515
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
npp
Novosphingobium sp. PP1Y
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npp03032
]
PP1Y_AT2071
03036 Chromosome and associated proteins [BR:
npp03036
]
PP1Y_AT2071
03400 DNA repair and recombination proteins [BR:
npp03400
]
PP1Y_AT2071
DNA replication proteins [BR:
npp03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PP1Y_AT2071
Chromosome and associated proteins [BR:
npp03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
PP1Y_AT2071
DNA repair and recombination proteins [BR:
npp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
PP1Y_AT2071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_bac_2
HU-DNA_bdg
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
CCA91178
UniProt:
F6IGB2
LinkDB
All DBs
Position
complement(225586..225867)
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AA seq
93 aa
AA seq
DB search
MIRSELLQALAKDNPELRTEDVERALDTFFDEIAQRLADGGRVELRGFGAFSTRHRDSRK
GRNPRTGETVEVPEKKVPYFKPGKEMRAKLNVS
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgatcaggtcggaactgctgcaggccctggccaaggacaatccggaattgcgaaccgaa
gacgtcgagcgcgcgctcgataccttcttcgacgagatcgcgcagcgccttgccgatggc
ggccgcgtcgaactgcgcggcttcggcgcattttccactcgccaccgcgacagccgcaag
ggccgcaacccgcgcaccggcgaaaccgtggaagttcccgagaagaaggtgccgtatttc
aagcccggcaaggaaatgcgcgccaagctgaacgtcagctaa
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