Novosphingobium sp. PP1Y: PP1Y_AT21557
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Entry
PP1Y_AT21557 CDS
T01515
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp00300
Lysine biosynthesis
npp00470
D-Amino acid metabolism
npp01100
Metabolic pathways
npp01110
Biosynthesis of secondary metabolites
npp01120
Microbial metabolism in diverse environments
npp01230
Biosynthesis of amino acids
Module
npp_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PP1Y_AT21557
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PP1Y_AT21557
Enzymes [BR:
npp01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
PP1Y_AT21557
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
CCA93024
UniProt:
F6INM2
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All DBs
Position
2287100..2288326
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AA seq
408 aa
AA seq
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MKALGPIPAGFTSIDGVLAMGGKPVTHWVEEAGGTPLFLYSADRVRERVAALRAAMPGRL
SLHYAVKANPFAPLLSAMSGLVDGFDIASGGELEIVRGAGIALDKVSFAGPGKRDAELEA
AIMAGVTLNLESEGEAARALAIAGQLGVTPRLAIRVNPNFDLKGSGMKMGGGAKPFGLDA
ERVPALVREVIASGAEWRGFHIFAGSQALSAEAIAETQGQTLDLAARLADESGAPLPHCN
LGGGFGIPYFPGDEALDISLIGERLAERFENLPDTLRETHFCIELGRYLVGESGVYIARI
VDRKVSHGEVFLITDGGLHHQLAASGNFGTVVRRNYPSAIATRFGAEVEEEASIVGCLCT
PLDKLADKGGFPRAEVGDLVAVFCAGAYGASASPANFLGQGPARELLV
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgctcggaccgatcccggccgggttcacctccattgacggcgttctggcgatg
ggcggcaagccggtgacgcattgggtggaagaggccggtggaaccccgctgttcctctat
tccgccgaccgggtgcgcgaacgggtcgcggccctgcgcgccgcgatgccggggcggctg
tcgctgcattacgcggtgaaggccaatcccttcgcgccgctgctctcggcgatgtccggt
cttgtcgacggcttcgacattgcctcgggcggtgagctggagatcgtgcgcggtgccggg
attgcgctcgacaaggtgagcttcgcaggccccggcaaacgcgatgccgagctggaagcg
gcgattatggccggggtgacgctcaatctcgaatccgagggcgaggctgcgcgggcgctg
gcaatcgccgggcagctgggcgtgacgccgcggctggcgatccgggtgaaccccaatttc
gacctcaagggttcgggcatgaagatgggcggcggcgccaagcctttcgggctcgatgcc
gagcgggttcccgcgctcgtgcgcgaagtcatcgccagcggcgccgaatggcgcggcttt
cacatattcgctggcagccaggcgctttccgccgaggcgattgcagagacccagggccag
accctcgaccttgcggcgcgtcttgccgatgaaagcggagcgcctctgccgcactgcaat
ctcggcggcggcttcggtatcccctattttccgggagacgaagcactggacatttcgctc
atcggcgagcggctggccgagcgcttcgagaacctcccggacaccttgcgcgaaacgcat
ttctgcatcgagctgggcagatatctcgtgggcgaatcaggtgtttacattgcccgcatc
gtcgaccggaaggtcagccacggcgaagtttttctgatcaccgatggcgggttgcatcac
cagctcgcggcctcgggaaatttcggaaccgttgtgcgccgcaactatccctcggcgata
gccacgcgcttcggagccgaggtcgaggaagaggcgtccattgtcggttgcctgtgcacg
ccgctcgacaaactggcggacaagggcgggttcccgcgcgccgaggttggcgatctcgtg
gcggtgttctgtgccggggcttatggtgccagcgccagtccggcgaatttcctggggcag
ggaccggcccgcgaactgctggtctga
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