Novosphingobium sp. PP1Y: PP1Y_AT21768
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Entry
PP1Y_AT21768 CDS
T01515
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP1Y_AT21768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npp03019
]
PP1Y_AT21768
03009 Ribosome biogenesis [BR:
npp03009
]
PP1Y_AT21768
Enzymes [BR:
npp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PP1Y_AT21768
Messenger RNA biogenesis [BR:
npp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PP1Y_AT21768
Ribosome biogenesis [BR:
npp03009
]
Prokaryotic type
rRNA processing factors
PP1Y_AT21768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CCA93040
UniProt:
F6INN8
LinkDB
All DBs
Position
complement(2307987..2310836)
Genome browser
AA seq
949 aa
AA seq
DB search
MATRMLIDARHPEETRVAVLKGNRIEEFDFESTERKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKEDREALLAEEAAHAEEEAALRARDGDDEDDDENGNDG
EDFDDGGLTEVDTSEKDEVATIEDGNVENGFDHGSEEEGETSEDEHGGSRRRGRRRQGKG
RSKEADELRAKRIALRRRYKIQDVIHRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVL
MPNSSHGGGISRKISSASDRKRLKSIIAELELPRSMGCIVRTAGLQRTKTEIKRDFDYLA
RLWDELREKTLGSAAPSLIHSDSDLVKRAIRDIYNREIEEVVVEGEEGYRAAKDFMKLLM
PSHARRVKPYSDPVPLFQRYGAEDQLTAMYDPVVQLRSGGYIVINPTEALVSIDINSGRA
TKEHGIEQTAVATNLEAAQEIARQLRLRDMAGLVVIDFIDMEYGSNVRKVEKAMKDALKN
DRARIQVGRISSFGLMEMSRQRLRTGVLEATTRSCPHCDGTGLVRTASSAGLSALRLIED
EAAKGKGVVVSLFASTEAAVYLLNAKRTDLADIEARYGVAVEVIPEGENEGAKMRVISSG
PRNEFVPRFEPIAVEVEDDDIPEDDEDEIEREDAEARSEGEGRRKRRRRRRGRNRDRRDE
QSGDESAETEASESAENDNEGEETFAGGDDEEGDAPRKRRRRGGRRRRGRRVDEAGEQTE
GEAGDDSQGSHEDADVAEAPAEAEAPIEATPVAEAEPEVEEAPKPKKRTRRKKAEPKPEA
AEAAVEEAPEAVAAEAPAEETPVAEEAPAKPKRTRRKKAEPKPEAEAAEAPAEDAPAAEE
APAKPKRTRRKKAEPKPEAEVVEAAAEDAPAAEEAPAKPKRARRKKAEPKPAEEAEPVAV
EAAAPEATPVEAAPVGEEVTADASSGDEAANDESAERPRRGWWQRTFGE
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgctcatcgatgcgcgccacccggaagaaacgcgggtggccgtactc
aagggaaatcgcattgaagagttcgatttcgaatcgaccgaacgcaagcagataaaaggc
aacatctacctcgcgaaggtgacccgtgtggaaccttcgctgcaggctgccttcgtcgac
ttcggaggaaaccgtcacggcttcctcgccttcagcgaaattcatcccgactactaccag
attccgaaggaagaccgcgaagcgcttctggccgaagaagcggcccatgccgaagaagaa
gccgccctgcgcgcccgtgacggcgacgatgaggacgacgatgaaaacggcaacgacggc
gaagacttcgacgacggcggcctgaccgaagtcgacacatccgaaaaggacgaagtcgcc
accatcgaggatggcaacgtcgagaacggcttcgaccacggcagcgaggaagaaggcgaa
acgtcggaagacgagcacggcggttcgcgccgtcgcggtcgccgccgccagggcaagggc
cgttcgaaggaagccgacgaactgcgcgccaagcgcatcgccctgcgccgccgctacaag
atccaggacgtcatccaccggcgccaggtcctgctggtgcaggtcgtcaaggaagagcgc
ggcaacaagggcgcggcgctgaccacgtacctcagccttgctggccgttactgcgtgctc
atgccgaactcgagccacggcggcggcatcagccgcaagatcagctcggcctcggaccgc
aagcgcctcaagtcgatcattgcagagcttgagctgccgcgttcgatgggctgcatcgtg
cgcaccgccggcctccagcgcaccaagaccgagatcaagcgcgacttcgactatctcgcc
cgtctctgggacgaactgcgcgaaaagacgctcggctcggccgctccctcgctgatccat
tcggacagcgacctcgtgaagcgcgcgatccgcgacatctacaatcgcgagatcgaggaa
gtcgtggtcgagggcgaggaaggctaccgcgccgccaaggacttcatgaagctgctcatg
cccagccatgcgcggcgggtgaagccctattccgacccggttccgctgttccagcgctat
ggcgccgaagaccagcttaccgcgatgtacgaccctgtcgtgcagcttcgctcgggcggc
tacatcgtcatcaacccgaccgaagcgctcgtttcgatcgacatcaactcgggccgcgcc
accaaggagcacggtatcgagcagacggcggtcgccaccaatctcgaagcggcccaggaa
atcgcccgtcagctgcgcctgcgcgacatggccggactcgtcgtgatcgacttcatcgac
atggagtacggctccaacgtccgcaaggtcgagaaggcgatgaaagacgcgctcaagaac
gatcgggcacgcatccaggtcggtcgcatctccagcttcggcctgatggaaatgagccgc
cagcgcctgcgcaccggcgttctggaagcgaccacccgctcctgcccgcattgcgacggt
accggcctcgtgcgtaccgccagctcggcaggtctctcggcgctgcgcctgatcgaggac
gaagcggccaagggcaagggcgtggtcgtctcgctcttcgcgtcgaccgaagcggcagtc
tacctgctcaatgccaagcgcaccgacctggccgacatcgaggctcgctacggcgtggca
gtcgaagtcattccggaaggtgagaacgaaggcgccaagatgcgcgtcatctcgtcgggt
ccgcgcaacgaattcgtgccccgcttcgagccgattgccgtcgaggtcgaggatgacgac
atccctgaggatgacgaggacgagatcgagcgcgaggacgccgaagcccgctccgagggc
gaaggccgccgcaagcgtcgccgtcgccgtcgcggtcgcaatcgcgaccgtcgtgacgag
cagtcaggcgacgaaagcgccgaaaccgaagcctccgagagcgccgaaaacgacaacgag
ggcgaagaaaccttcgccggcggtgacgatgaggaaggcgatgcgccccgcaagcgccgc
cgccgtggcggtcgccgcaggcgcggacggcgcgtcgacgaggcaggcgagcagaccgag
ggtgaagccggcgacgacagccagggttcgcacgaggacgcagacgttgccgaagctcct
gccgaagccgaagctccgatcgaggccactccggtagccgaggccgagcctgaggttgag
gaagctcccaagccgaagaagcgcacgcgccgcaagaaggccgagcccaagcccgaagca
gccgaagccgcagttgaggaagcgcctgaagcagtcgctgccgaagctccggccgaggaa
actccggttgccgaggaagcgccggccaagcccaagcgcacccgccgcaagaaggccgag
cccaagcccgaagccgaagcggccgaggctcccgctgaggatgcccctgctgccgaggaa
gcgccggccaagcccaagcgcacccgccgcaagaaggccgagcccaagcccgaagccgaa
gtggtggaagcagccgcagaggacgcccctgccgccgaggaagcgccggcaaagcccaag
cgcgcgcgccgcaagaaggccgagcccaagcccgccgaggaagcagagccggttgcagtt
gaggccgctgcgcctgaagcgacgcccgtcgaagccgcccctgttggcgaggaagtgact
gcggacgcatcgtcaggtgacgaagcagccaatgacgagagcgccgagcgcccgcgtcga
ggctggtggcagcgcacgttcggcgaataa
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