Novosphingobium sp. PP1Y: PP1Y_AT24563
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Entry
PP1Y_AT24563 CDS
T01515
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
npp
Novosphingobium sp. PP1Y
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npp03032
]
PP1Y_AT24563
03036 Chromosome and associated proteins [BR:
npp03036
]
PP1Y_AT24563
03400 DNA repair and recombination proteins [BR:
npp03400
]
PP1Y_AT24563
DNA replication proteins [BR:
npp03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PP1Y_AT24563
Chromosome and associated proteins [BR:
npp03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PP1Y_AT24563
DNA repair and recombination proteins [BR:
npp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PP1Y_AT24563
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
Phage_cement_2
HU-CCDC81_euk_2
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
CCA93248
UniProt:
F6IP96
LinkDB
All DBs
Position
2573414..2573689
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AA seq
91 aa
AA seq
DB search
MNNAELAELVATANDLTKADARKIVDSVFVSIGEAAARGEEVALNAFGKFKVKHTPAREG
RNPANGETIMIAASRKLTFSAAKAVKDKLNG
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgccgaactcgccgaactggtcgccaccgccaacgatcttaccaaggcggat
gcccgcaagatcgtcgattccgtgtttgtctcgatcggcgaagccgcggcgcgtggtgaa
gaggtcgctttgaatgcgttcgggaagttcaaggtgaagcatactccggcacgcgaaggc
cgtaacccggccaatggcgagacaataatgatcgcggcctccaggaagctgaccttctcg
gcagcgaaggcggtgaaggacaaacttaacggatga
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