Novosphingobium sp. PP1Y: PP1Y_AT24591
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Entry
PP1Y_AT24591 CDS
T01515
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03410
Base excision repair
npp03430
Mismatch repair
npp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PP1Y_AT24591
03430 Mismatch repair
PP1Y_AT24591
03440 Homologous recombination
PP1Y_AT24591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npp03400
]
PP1Y_AT24591
DNA repair and recombination proteins [BR:
npp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PP1Y_AT24591
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PP1Y_AT24591
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PP1Y_AT24591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF2529
Motif
Other DBs
NCBI-ProteinID:
CCA93251
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All DBs
Position
complement(2575976..2577763)
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AA seq
595 aa
AA seq
DB search
MASRSASLFGIDKSLTGKAWRWRGGNMDLSDGPGGLENDIVTQLLLSRGVPREELDRHRT
PSLRAFLPDPSEFRDMDAAAERLAQAIMTGEAVTVYGDYDVDGATSAALLILLMRSLGHD
ARYYIPDRLLEGYGPSGEALVRIAGEGSSLIVTVDCGAMAHEALEMAHGAGVDVIVVDHH
KCSPELPRAAALVNPNRLDESAIGADHGHLAAVGVAFLLAVATVRTLRRQGFFAERREPD
LFALLDLVALGTVADVAALHGLNRALVAQGLKVMARRDNIGMSALIDASRLNRAPTCSDL
GFALGPRINAGGRVGESTLGVRLLTTTDPDEARDIAAQLSRLNDERRAIEQVVQEAAEAQ
IDRQHNRAVLVLAGAGWHPGVIGIVAGRIKEKTGKPTLVIALDADEAGNGKGSGRSITGV
DLGAAIIAAREAGLLVAGGGHAMAAGLTIAPDKLEALSEWLDSRLATDVAHASANQAMLL
DLALAPGGLTPTLVETLESAGPYGMGWPGPRVAVGPVRIVKADIVGADHVRLIVGGTDGG
RFKAMAFRSAETEMGQALLHASQGRRLWLAGRAKIDDWGSRPQAELHIDDAAFAD
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcgatctgcttcactcttcggcatcgacaaatccctcaccggcaaggcctgg
cgctggcgcggcggcaacatggacctctcggacggcccgggcgggctggaaaacgacatc
gtcacccagctcctgctttcgcgcggcgtcccgcgtgaggagctggaccgccatcgcacc
ccctcgctgcgggctttcctgcccgatccgtccgaattccgcgacatggacgccgccgcc
gaaaggctggcacaggcgatcatgaccggcgaggccgtgacggtctatggcgactacgac
gtcgacggagcgacgagcgcagccctgctgatcctgctgatgcgctcactggggcacgat
gcccgctactacattcccgaccgcctgcttgaaggctacggcccatcgggagaggcgctc
gtacgcattgccggagaaggctccagtctgatcgtcaccgtcgactgcggcgcgatggcg
catgaagcgctggaaatggcccacggcgcgggtgtcgacgtgatcgtcgtcgaccatcac
aagtgctcgccggaactgccgcgcgccgctgcgctggtcaatccgaaccgtctcgacgaa
agcgccatcggcgccgatcacggccatcttgccgccgtcggtgtcgccttcctgcttgcc
gtcgccactgtgcgcaccttgcgccgtcagggcttcttcgccgagcgccgcgaaccagac
cttttcgcacttctcgacctcgtggcactgggcaccgtggccgatgtcgccgcgctccac
ggcctcaaccgcgccctcgtcgcccaaggcctgaaggtcatggcccggcgcgacaacatc
ggcatgtcggcgcttatcgacgcaagccgtctcaaccgcgcgccaacgtgcagcgacctg
ggctttgccctcggcccgcgcatcaatgccgggggccgcgtgggcgaatcgacgctgggc
gttcgcctgctgaccaccaccgatcccgacgaagcgcgcgacatcgctgcccagctctca
cgcctcaacgacgagaggcgcgcgatcgagcaggtggttcaggaagcggccgaagcgcag
atcgatcgccagcacaaccgcgcggtgctcgtactcgccggagccgggtggcacccgggg
gtcatcggcatcgtggccgggcggatcaaggaaaagaccggcaagccgacgctcgtcatc
gcgctcgacgcggacgaagcgggcaacggcaagggatcgggacgctcgattaccggggtc
gaccttggcgccgcgatcattgccgcgcgcgaggcaggcctgctcgtggcgggcggcgga
catgccatggcggcggggctgactatcgcgcccgacaagctcgaagccttgtccgaatgg
ctcgattcgcgtctcgccaccgatgtggcccatgccagcgcgaaccaggcgatgttgctc
gacctcgcactcgcaccgggcggattgactcctacgctggtcgaaacgctggaaagcgcc
ggtccctacggcatgggctggccggggccgcgcgtcgcagtcggcccggtgcggatcgtc
aaggccgacatcgtgggcgcagaccacgtccggctgatcgtcggcggaacggatgggggc
cgtttcaaggccatggccttccgttcggccgaaaccgagatgggccaggccctcctccat
gcctcgcaggggcgccgcctctggcttgccggacgagcgaagatcgacgactggggcagc
cgcccccaagccgaattgcatatcgacgatgccgcatttgcggactga
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