Novosphingobium sp. PP1Y: PP1Y_AT25632
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Entry
PP1Y_AT25632 CDS
T01515
Name
(GenBank) DNA repair protein RadA/Sms
KO
K04485
DNA repair protein RadA/Sms
Organism
npp
Novosphingobium sp. PP1Y
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npp03400
]
PP1Y_AT25632
DNA repair and recombination proteins [BR:
npp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PP1Y_AT25632
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATPase
AAA_25
Zn_ribbon_LapB
DnaB_C
ChlI
AAA
AAA_16
AAA_22
Lon_C
AAA_30
GvpD_P-loop
MCM
KdpD
nSTAND3
AAA_5
RecA
NACHT
DUF7129
NTPase_1
DUF7125
Glyco_hydro2_C5
AAA_24
Zeta_toxin
DAP3
Motif
Other DBs
NCBI-ProteinID:
CCA93353
UniProt:
F6IPK1
LinkDB
All DBs
Position
2690722..2692089
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AA seq
455 aa
AA seq
DB search
MAKPKRRYVCQNCGSVATRWQGQCADCGEWNSLVEEAPQTVFSSKHDLSSGGRPIQFTPL
DQPGEIPQRQASGLAEFDRALGGGLVPGSAILMGGDPGIGKSTLLLQASAHIARAGRDVV
YVSGEEASGQVRLRAERLGLSKCPIRLASATSVRDILTTLGMDEPPSLLVIDSIQTMHSD
QIEGAPGSVSQVRGCAFELIRYAKENSVTLILVGHVTKDGNIAGPRVLEHMVDVVMSFEG
ERSHQYRILRSLKNRFGPVDEIGVFAMEGDGLAEVGNPSMLFLSGREEPMAGSAVFPAME
GTRPVLVEIQALIVRLQSGATPRRAVVGWDNGRMAMLLAVLEARCGLNFSSAEVYLNVAG
GYRLADPAADLAVAAALVSALGDKPLPTDAVWFGEVSLAGEIRPVAHSSIRQRESAKLGF
GKAIGPAGGPPPDKGIRFSGLTMLPNLVDRILSDA
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcccaaacgtcgttacgtatgtcagaattgcggaagcgtcgcgacccggtgg
caggggcagtgcgcggattgcggtgaatggaactcgcttgtcgaggaagcaccgcagacg
gtcttttcttccaagcacgatctctcttccggcggtcgcccgatccagttcaccccgctc
gaccagcctggcgaaattccccagaggcaggccagcggccttgccgagttcgatcgcgcc
ctgggtggcggcctggtccccggatcggcgatcctcatgggcggggatccgggtatcggc
aagtcgacgctgctgctgcaggcctcggcgcacatcgccagggccgggcgtgacgtcgtc
tatgtcagcggcgaggaagcgtccggtcaggttcggctgcgggctgaacgccttggcctg
tcgaagtgtccgattcgcctggcctccgcaacatcggtgcgggacatcctcactacgctg
gggatggatgagccgccgtcgcttctggtcatcgattcgatccagacgatgcactcggac
cagatcgagggtgcgcccgggtcggtcagccaggtgcgcgggtgcgccttcgaactgatc
cgctacgccaaggaaaacagcgtcaccctcatcctcgtcggtcacgtcaccaaggacggc
aatatcgccggtccgcgcgtgctggagcacatggtcgacgtggtgatgagcttcgagggg
gaacgcagtcaccagtaccgcatcctgcgctcgctcaagaaccgtttcggtccggtcgac
gagatcggcgtcttcgccatggagggcgacggacttgccgaagtcggcaatccctcgatg
ctgttcctttctggccgcgaggaaccgatggcgggcagcgcggtcttcccggcgatggaa
gggacccggccagtcctcgtggaaatacaggcgcttatcgtgcgcctgcagagcggggcg
acgccgcggcgtgccgtcgtcgggtgggacaatggccgcatggccatgctgctcgccgtg
ctcgaggcacgatgcggccttaatttctccagtgcggaagtctatctcaacgtcgctggc
ggttatcgccttgccgatccggcggccgaccttgccgtggccgctgcgctcgtctcggcc
ctcggtgacaagcctctgccgacggacgctgtgtggttcggtgaagtctcgctcgccggt
gagattcggcccgtggcccattcatcgatccgacagcgcgaatcggcgaaacttggcttt
ggcaaggctattggacctgccggtggaccgccgcccgacaagggcatccggttttccggt
ctgacaatgcttcccaacctcgttgaccgcattctttcggatgcttaa
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