Novosphingobium sp. PP1Y: PP1Y_AT26798
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Entry
PP1Y_AT26798 CDS
T01515
Name
(GenBank) structural toxin protein RtxA
KO
K20276
large repetitive protein
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PP1Y_AT26798
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_5
Cadherin_4
HYR
Motif
Other DBs
NCBI-ProteinID:
CCA93459
UniProt:
F6IPV7
LinkDB
All DBs
Position
complement(2810646..2815253)
Genome browser
AA seq
1535 aa
AA seq
DB search
MPTALADSGTVTEGGTLTVPATGVLANDVPGADGATITGVATGTDTSAPVTGNLGGAGIA
GTYGTLILGADGSYTYQSTANAVPPAGATDSFVYTITDGDGDTSTTTLTISLTDSGLAAS
NEDASVDEAALGIGSNPSSTAETVSGSLTDNASGGAGGYTYALVGSATGSHGTITIDPSG
SWSYTLTSPVDGATLDNGVTTENNLESFTYQVTDADGNTTTSTITIDVIDDVPTARADTD
SVVEGASTDGNVLSGTGTTSGLVDVLGADGAAPGGAVTGVATGTDTSAPVSGNLGGAGIA
GTYGTLILGADGSYTYQSNANAVPPAGATDSFVYTITDGDGDTSTTTLTISLTDSGLAAS
NEDASVDEAALGIGSNPSSTAETVSGSLTDNASGGAGGYTYALVGSATGSHGTITIDPSG
SWSYTLTSPVDGATLDNGVTTENNLESFTYQVTDADGNTTTSTITIDVIDDVPTARADTD
SVVEGASTDGNVLSGTGTTSGLVDVLGADGAAPGGAVTGVATGTDTSAPVSGNLGGAGIA
GTYGTLILNADGSYTYNSTANSISGNATDSFVYTITDGDGDTSTTTLTISLTDVSLVGDD
ESVTVYEKALDTAQTGADVAAGSITGSMPSDTGETASGAVSVTGASGYSIAGGSVSGNET
TVVGTYGTLVLNNSTGAFTYTLTSPVTTTPSANDGVSTALGAESFTYTASDANGNTTTGT
ISIDVVDDTPYAVVPEAIQVTNGAAPVSAPADLDADMSVIDNYGADGAGTVRFAPSLDGA
DSGLTHNFVSITYTLVSDTVLEAYAGADKIFTVTLDPTTATYTVDMDGTIDSIQTIDFNA
GGYNFVGGNNSWSGFIPVGETVGSPIDNNSQDLLLTPSINNADDGTINSTANTGGIGGGA
SVGSNETFRVDFVTDLRGDPKDGAGDYDTAANRDHMFDGHYTVNGAVALFKSTNGSTVNI
AAFDDPDGNTVVGDGDKDSITGISIVWRGTQYVDGSGDPIIIPTITATNYTVNGHVFTVT
LLGDGSVNVAGVEGAPGSSQVGTQIAVFTGDGFNSVEYTWAGGDTFQIGDFGASTLTNDP
VNFTIPVEVVDGDGDVSAQSNLSITAVTTTPPVALDLDGDGVEFVGLDAGVTHDYGSGLV
QTAWVSADDGLLAHDTGHGLDIVFTDDAAGAETDLEGLRLAYDSNGDGKLTAADESYSEF
GVWQDANSNGVVDAGEFKTLAQMGITSIELTAEGPGSSQADGDAIVHATGEYTMKGATYA
LADVSFATANVESQTAARTAEMAAITAAAAGFMMSGAAHAMPLSPIAIEAIAAAMQTFET
HLPEVTVAVPEHAPATPPVTFLQDGQQAHQDSEPESHLSQHAAEQGAGHGLGDVVQHQDV
SVQPLGGGEEGHVQASAAPALFGGADSGLMQALLLAAQGEQAGGSNDQGNGTGAGQGSGH
GGEHGSGNLPAVQEAIAESAGHHAVDSLIDHFAGHQGAHGAPAIAETMGADGLDHVLGAM
LAGGGLDGLHAAGLAGGFEMAAMAAAMEAHSTTVA
NT seq
4608 nt
NT seq
+upstream
nt +downstream
nt
atgccgacggcgcttgcggattcggggacggtcaccgagggcggcaccttgactgtgccg
gcaacgggtgtgctggcgaacgatgtcccgggggctgacggcgcgacgatcaccggcgtt
gccaccggcaccgacacttcggcgccggttaccggcaacctcggcggggctggcatcgcg
ggcacctacggcacgctgatcctgggcgccgacggcagctatacctaccagtcgaccgcc
aatgcggtgccgcctgcgggggcgaccgacagcttcgtctacaccatcaccgatggcgac
ggcgatacctcgaccacgacgctgacgatcagccttaccgacagcggccttgccgcgagc
aacgaggatgcctcggtcgatgaagcggcgctgggcatcggttccaacccgtcctcgacg
gcggagaccgtctcgggctcgctgaccgacaatgcctcgggcggcgcgggcgggtatacc
tatgcgctggtcggctcggcgacgggcagccacgggacgatcaccatcgatcccagcggt
tcttggagctacacgctcaccagcccggtcgacggcgccacgctcgacaacggcgtgacc
accgagaacaacctcgagagcttcacctaccaggtgaccgatgctgacgggaacacgacc
accagcacgatcaccatcgatgtcatcgacgatgtgcccaccgcgcgcgccgataccgac
agcgtcgtcgaaggcgcttcgaccgacggcaatgtgctttccggcaccggcacgacttcg
ggtctggtcgatgtgctgggcgccgacggcgcggccccgggcggggcggtcaccggcgtt
gccaccggcaccgacacttcggcgccggtcagcggcaacctcggcggtgcgggcatcgcg
ggcacctacggcacgctgatcctgggcgccgacggcagctatacttaccagtcgaacgcc
aatgcggtgccgcctgcgggggcgaccgacagcttcgtctacaccatcaccgatggcgac
ggggacacttcgaccacgacgctgacgatcagcctcaccgacagcggccttgccgcgagc
aacgaggacgcctcggtcgatgaggccgcgctgggcatcggttcgaacccgtcctcgacg
gcggagaccgtctcgggctcgctgaccgacaatgcctcgggcggcgcgggcggttatacc
tatgcgctggtcggctcggcgacgggcagccacggcacgatcaccatcgatcccagcggt
tcttggagctacacgctcaccagcccggtcgacggcgcgacgctcgacaacggcgtgacc
accgagaacaacctcgagagcttcacctaccaggtgaccgatgctgacgggaacacgacc
accagcacgatcaccatcgacgtcatcgacgatgtgcccaccgcgcgcgccgataccgac
agcgtcgtcgaaggcgcttcgaccgatggcaatgtgctttccggcaccggcacgacttcg
ggtctggtcgatgtgctgggcgccgacggcgcggccccgggcggggcggtcaccggcgtt
gccaccggcaccgacacttcggcgccggtcagcggcaaccttggcggggctggcatcgcg
ggcacctacggcacgctgatcctcaatgcggatggcagctacacgtacaacagcacggca
aattcgatctcgggcaacgcaacagacagcttcgtctacaccatcaccgatggtgacggc
gatacctcgaccacgacgctgacgatcagcctcaccgatgtttcgctggtcggcgatgac
gagagcgtcacggtttacgagaaggctctcgacacggcccagacgggtgcggatgttgcg
gccggttcgattaccggttcgatgccttccgatacgggcgaaaccgcgagtggcgccgtc
tccgtgacgggggcgagcggctattctatcgccggaggatcagtcagtgggaacgagacg
acggttgtcgggacttacggcacgctcgtgctcaacaacagcaccggcgcctttacctac
acactgacctctcccgtcacgacgacgccgtcggccaatgacggcgtgtcgacggcgctc
ggcgcggagagcttcacgtacaccgcgagcgacgccaacgggaacacgacgacaggcacg
atctcgatcgatgttgtcgacgacacgccctatgccgtcgtgcccgaggcgatccaggtg
accaatggcgcggcgccggtctcggcccctgcggaccttgatgccgacatgtcggtgatc
gacaactacggggccgacggggcgggcactgtgcgtttcgcaccgtcactggacggggcg
gacagcggcctgacgcacaacttcgtatcgatcacctacacgctggttagcgatacggtg
ctggaagcctatgccggcgcggacaagatcttcaccgtcacgctggaccctacgacggcc
acctacacggtcgacatggacgggaccatcgactcgatccagaccatcgatttcaatgcc
ggcggctacaatttcgtgggcggcaacaacagctggtcgggcttcattccggtgggcgag
acggtgggatcgccgatcgacaacaacagccaggatctgctgctgacaccgtcgatcaac
aacgccgacgacggcacgatcaactccaccgccaataccggtggtatcggcggaggcgct
tcggtcggttcgaacgagaccttccgggtcgacttcgtcaccgatctgcgcggcgatccg
aaggacggcgccggggactacgatacggctgcgaaccgcgaccacatgttcgacggccac
tataccgtgaacggggcggtggcgctgttcaagtcgaccaatggctcgaccgtgaacatt
gccgcgttcgacgatccggacggcaacaccgtcgtcggtgacggcgacaaggactcgatc
accggcatttcgatcgtctggcggggaacgcagtacgtcgatggaagtggtgatccgatc
atcatcccgacgatcactgcaacgaactacaccgtgaatggacacgtctttaccgtgacc
ctgcttggcgatggttcggtcaatgtcgccggggttgaaggcgcccctggatcgagccag
gtcggcacgcagatcgcggtcttcacgggcgacggcttcaacagcgtcgagtacacctgg
gctggcggcgacaccttccagatcggcgacttcggcgcgagcacgctgaccaacgacccg
gtcaacttcaccattccggtcgaagtggtggacggcgacggcgacgtttcggctcagtcc
aatctctcgatcactgcagtgacgacgacgcctccggtggcgctagatctcgatggcgac
ggcgtcgagttcgtcggactcgatgccggagtcacgcacgactatggcagcggacttgtg
cagaccgcgtgggtcagcgccgatgacggcctgctggcccacgataccgggcacggcctc
gatatcgtcttcaccgacgatgccgcgggagcggaaaccgacctcgagggcctgcgcctg
gcttacgacagtaatggcgacggcaagctgacggcagccgatgagagctacagcgagttc
ggcgtctggcaggatgcgaacagcaacggcgttgtcgatgcgggcgagttcaagacgctg
gcgcagatggggatcacttcgatcgagctgactgcggaaggtccggggtcgtcgcaagcc
gatggcgatgcaatcgtccatgcgaccggcgagtacaccatgaagggtgccacttacgca
ctggccgacgtctcgttcgcaacggcgaacgtcgagagccagactgcggcgcgtaccgcc
gaaatggcggcgatcactgcggctgcggcaggcttcatgatgtcgggtgcggcccatgcg
atgccgctctcgccaatcgcgatagaggcgattgccgcggcgatgcagactttcgagacg
catctgcccgaagtgacggttgcagtgccggaacatgctccggcgacaccgccggtgaca
ttcttgcaggatggccagcaggctcaccaggacagcgagcccgaaagccacctgtcgcag
cacgcagcggagcagggcgccgggcatggcctgggtgacgtggtgcagcatcaggacgtc
tccgtgcagccgcttggcggcggcgaggaaggccacgttcaggcgagtgcggctccggct
ctgttcggcggcgctgactcggggctgatgcaggcattgctgctcgccgcacagggcgag
caggccggtggttcgaatgaccagggcaatggcaccggagccgggcaggggagcgggcac
gggggcgaacatggctccgggaatctacctgccgtgcaggaagcgattgccgaaagcgcc
gggcaccatgctgtggactcgctgatcgaccacttcgccgggcatcaaggcgcacacggc
gctcccgcgattgccgagacgatgggggcggacggcctggatcacgtgcttggcgccatg
ctcgccggcggcggcctcgacggcctgcacgcggcggggctggccggtggatttgagatg
gctgcaatggctgcagccatggaagcacattcgacgacggtcgcctga
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integrated database retrieval system
