Novosphingobium sp. PP1Y: PP1Y_AT27
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Entry
PP1Y_AT27 CDS
T01515
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP1Y_AT27
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npp03021
]
PP1Y_AT27
03019 Messenger RNA biogenesis [BR:
npp03019
]
PP1Y_AT27
Transcription machinery [BR:
npp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PP1Y_AT27
Messenger RNA biogenesis [BR:
npp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PP1Y_AT27
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
ATPase_2
Spore_III_AA
AAA_22
S1CSD-TOTE-2
AAA_25
AAA
GpA_ATPase
AAA_14
Motif
Other DBs
NCBI-ProteinID:
CCA90980
LinkDB
All DBs
Position
2081..3337
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKELKKKTPAELVEMAEEMGVEGASTMRRQDLMFGILKEVAEDGEEIIGQGTIEVLTD
GFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPKDGERYFAITKLMSVN
YDDPDVVRHRVNFDNLTPLYPDERLKLDSLDPTVKDKSARVIDLISPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPAQRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVPKDQLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFATMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgaaagaactgaagaaaaagaccccggccgagctcgtggagatggccgaggaa
atgggagtagaaggcgcttcgacgatgcgccgccaggacctgatgttcggcattctcaag
gaagtcgccgaagacggtgaggaaatcatcggccagggcacgatcgaagtgctgaccgac
ggtttcggattcctgcgcagtcccgaagcgaattatctcgccggcccggacgacatctac
gtctcgcccaaccaggtccgcaaatggggcctgcgtacaggcgataccgtggaaggcgag
atccgcgctcccaaggacggtgagcgctacttcgccatcaccaagctgatgagcgtcaac
tatgacgatcccgacgtggtgcgccaccgcgtcaacttcgacaacctgacgccgctctat
cccgacgaacgcctcaagctggacagcctcgaccctacggtcaaggacaagtcggcccgc
gtgatcgacctgatcagcccgcagggcaagggccagcgtgccctgatcgtcgcgccgcca
cgcaccggtaagaccgtgctgctgcagaacatcgccaaggcgatcaccgacaaccatccg
gaagtcttcctgctggtgctgctcgtcgacgagcgcccggaagaagtgaccgacatgcag
cgctcggtgaagggcgaggtcatctcctcgactttcgacgagccggcccagcgccatgtg
caggtcgcggaaatggtgatcgagaaggccaagcgtctcgtcgagcacaagcgcgatgtc
gtcatcctgctcgactcgatcactcggctcggccgcgcctacaacaccgtcgtgcccagc
tcgggcaaggtgctgaccggcggtgtcgacgcaaacgccctgcagcgccccaagcgcttc
ttcggcgcggcgcgcaacatcgaggagggtggttcgctctcgatcatcgccaccgccctg
atcgataccggcagccgcatggacgaagtcatcttcgaagagttcaagggcaccggtaac
tcggagatcgtcctcgaccgcaaggttgccgacaaacgcatcttcccggctctggacgtc
ggcaagtccggcacccgcaaggaagagctgctggttcccaaggaccagctctccaagatg
tgggtcctgcgccgcatcctgatgcagatgggcacggtcgatgcgatggaattccttctc
gacaagatgaaggattccaagaccaacgaagacttcttcgcgacaatgaaccagtaa
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