Novosphingobium sp. PP1Y: PP1Y_AT27264
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Entry
PP1Y_AT27264 CDS
T01515
Name
(GenBank) metallo-beta-lactamase hydrolase subunit
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP1Y_AT27264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npp03019
]
PP1Y_AT27264
Messenger RNA biogenesis [BR:
npp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PP1Y_AT27264
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B
Lactamase_B_2
RMMBL
RNase_J_C
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
CCA93501
UniProt:
F6IPZ9
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Position
complement(2863158..2864783)
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AA seq
541 aa
AA seq
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MIPGNELLFCALGGSGEIGMNVNLYGCQGKWLMVDLGMTFGMNEYPGIDLVFADLEFIEN
ERENLLGIVLTHAHEDHIGAVPYFAQELGVPIYATPFTAKLVAAKLEEAGILGDVELIVV
EDLERFEIGPFGIRYVPLAHSIAEGNALLIDTPFGRIFHTGDWKLDDAPQIGTPATSEEL
TKIGDDGVLALVCDSTNVFNPKASGSEGDVFDGLLEEVKRHNGRRVLVTTFASNVARLQT
LGEVARRTNRKLCVAGRSLDRIIQTGQACGYLTDLPEIVDPETAMDLPRSDVLIVATGGQ
GEPRAALARISEGNHPIKLEKGDVVLFSSRQIPGNEIAIGKIQNRLADDGVVIVTDRQSH
IHVSGHPGRPELEALYGWIRPDILVPVHGEIRHMREQAKLGLSCGIPKAVFQKNGDLVRL
APGAPGKFGEVRSGRLVLDGDIIAPADGEAIVMRRRIAFNGVVSVAADRKGNVEVAAIGL
PLDEDYQAFIEEARSDVAQALAKSKKADHADRVEAARLAARRAATRWSGKRPQVQVLLLE
N
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
gtgatacccggtaacgaattgttgttttgcgcgctcggcggctcgggcgagattggcatg
aacgtcaatctctacggctgccagggcaagtggctgatggtcgaccttggcatgaccttc
ggcatgaacgagtacccgggcatcgatctcgtcttcgccgatctcgaattcatcgagaat
gagcgcgagaacctgctgggcattgtcctgacccatgcgcatgaagaccacattggtgcc
gttccctatttcgcccaggaactgggcgttccgatctatgcgacgcccttcacggcaaag
ctggtcgcggccaagcttgaagaggccggtattctcggcgatgtcgaactcatcgtggtg
gaagacctcgagcgtttcgagatcgggcctttcggcattcgctacgtgccgctcgcgcac
tcgatcgctgaaggcaacgccctgctgatcgatacgccgttcggccgaattttccatacc
ggcgactggaagctggacgacgcgccgcagatcggcaccccggcaaccagcgaggaactg
acgaagatcggtgacgacggcgtgctggcgctggtctgcgactctaccaatgtgttcaat
ccgaaggcatcgggttcggaaggcgatgtcttcgacggcctgctcgaggaagtgaaacgt
cacaatggtcgccgcgttctggtgaccacttttgcgtccaatgtcgcgaggctccagacg
ctaggcgaagtggcgcgccgcaccaaccgcaagctgtgcgtggcggggcgctcgctcgat
cgtatcatccagaccggccaggcttgcggatacctcacggatctgcccgagatcgtcgat
ccggaaacggcgatggacctgccgcgcagtgacgtgctgatcgtcgctaccggtgggcag
ggtgaaccgcgcgcggcgcttgcgcgcatttccgaaggcaatcacccgatcaagctggag
aagggcgatgtcgtcctcttctccagtcgccagattccgggcaacgagatcgccattggc
aagatccagaatcgtctcgcggacgacggtgtcgtgattgtcaccgaccggcagagccat
atccacgtttcgggccatcccgggaggccggaactcgaggcgctctatggctggatccgg
cccgacattcttgtgcccgtgcacggagaaatccgtcacatgcgtgagcaggcgaagctg
ggcctgtcatgcggcattcccaaggcggtcttccagaagaacggcgatctcgtgcgactg
gctccgggggcaccgggcaagttcggcgaagtccgctcgggccggctcgtactcgacggc
gatatcatcgcacctgccgatggcgaggccatcgtgatgcgccggcgcattgccttcaac
ggcgttgtctcggttgcagccgaccgcaaggggaacgtcgaagtggccgccataggcctg
cctctggacgaggactatcaggcgttcatcgaagaggcgcgcagcgacgttgcccaggcc
ctggccaagtcgaaaaaggcggatcacgccgaccgcgtagaggccgcgcgcctggccgcg
cggcgtgcggcgacccgttggtcgggcaagcgaccgcaggtccaggtcctgcttctcgag
aattga
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