Novosphingobium sp. PP1Y: PP1Y_AT28328
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Entry
PP1Y_AT28328 CDS
T01515
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
npp
Novosphingobium sp. PP1Y
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
npp03016
]
PP1Y_AT28328
Enzymes [BR:
npp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
PP1Y_AT28328
Transfer RNA biogenesis [BR:
npp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PP1Y_AT28328
Prokaryotic type
PP1Y_AT28328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Pus10_C
UBA
Motif
Other DBs
NCBI-ProteinID:
CCA93614
UniProt:
F6IFV6
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All DBs
Position
2977827..2978573
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AA seq
248 aa
AA seq
DB search
MTRYALTLEFDGSPFMGLQRQAHGPSVQQSVEDAVHSITGETAIMHAAGRTDAGVHALAM
RAHVEIEKPFTPFRLMEAINAKLRPDPIAVIACEEVPDDWHARFSCIGRAYIYRIVNRRA
PLTLERGKAWQVAKPLDAQAMHRAAQFLVGRHDFTTFRSAHCQAQSPLKTLDRLDVRREG
EHVLIEAEARSFLHHQVRSMVGCLAMVGMGRWREEQVREALEARDRQALGLNAPPDGLYF
VRAVYSGE
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgctacgccctcaccctcgaattcgacggcagcccgttcatgggcctgcagcga
caggctcacggcccctcggtgcagcagagcgtcgaggacgccgtccattcgatcaccggc
gaaaccgcgatcatgcacgcggccggacgcaccgatgcgggcgtccacgccctggcgatg
cgggcccatgtcgagatcgaaaagccgttcacaccgtttcggctgatggaagcgatcaac
gcaaagctgcgccccgaccccatcgccgtgatcgcctgcgaggaagtgcccgacgactgg
cacgcccgcttttcgtgcatcgggcgcgcctatatctatcgcatcgtcaaccgccgcgcg
ccgctcacgctcgagcgcggcaaagcctggcaagttgccaagcccctcgacgcacaggcg
atgcatcgcgccgcacagttccttgtcgggcgtcatgacttcaccaccttccgctcggcc
cattgccaggcgcaaagcccgctcaagacactcgaccgcctcgacgtacggcgcgaaggc
gagcatgtgctgatcgaggccgaggcgcgcagcttcctgcaccatcaggtgcgctcgatg
gtcggctgccttgccatggtcggaatgggccgctggcgcgaggagcaggtgcgcgaagca
ctggaagcgcgcgaccgccaggcgctcggattgaatgccccccccgacggcctttatttc
gtaagggccgtatattctggagaatga
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