Novosphingobium sp. PP1Y: PP1Y_AT30303
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Entry
PP1Y_AT30303 CDS
T01515
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03420
Nucleotide excision repair
npp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PP1Y_AT30303
03430 Mismatch repair
PP1Y_AT30303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npp03400
]
PP1Y_AT30303
Enzymes [BR:
npp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PP1Y_AT30303
DNA repair and recombination proteins [BR:
npp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PP1Y_AT30303
MMR (mismatch excision repair)
Other MMR factors
PP1Y_AT30303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
PcrA_UvrD_tudor
RA_3
DUF3553
DUF2067
Motif
Other DBs
NCBI-ProteinID:
CCA93792
UniProt:
F6IGU8
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All DBs
Position
3185611..3187887
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AA seq
758 aa
AA seq
DB search
MPAASNDPLIDGLNAPQKEAVLTTEGPVLMLAGAGTGKTAALTRRLANIIRNRLAWPSEV
LCVTFTNKAAREMRDRVGQLVGPAVEGMPWLGTFHAIAARMLRRHAELVGLQPNYTIIDT
DDQLRLLKQLIQAEGVDEKRFPARQLAGCIDRWKNRGLNPQDLDAAENEAYANGRGQKFY
SLYQDRLKTLNACDFGDLLLHMLNILRTHREVLEQYQQRFKYVMVDEYQDTNQVQYLWLR
LIAQGRQNICVVGDDDQSIYSWRGAEVANILRFEKDFPGAKVIRLEQNYRSTPEILAAAS
GLINENSQRLGKTLWTERHPGDKVRVIGVWDAPEEARRVGDEIERLEREGAPLDQMAILV
RAQYQTREFEDRFISIGLKYRIVGGFRFYERAEIRDALAYLRVIAQPADDLAFERIYNAP
KRGLGAKALEKLHQLARRQGIPLAAAAIEIVDTDELPARARNTFLSLMRDFARWRDLEKT
ENPADLMRTVLDESGYTDALQAERTAEASGRLENLVELARAMEEYESLGDFLEHVSLVMD
NDAASDEEKVTIMTMHAAKGLEFDHVFLPGWEEGVFPSQRSLDEGGLASLEEERRLAYVA
ITRARRKCTILHAANRRIYGQWTSSIPSRFIAELPEDHVESETTLTGGASLWRAQWSEHA
DPFADVARAQPARTMTRGPGWQRAAAREFETKPRRIAETTRSAASFAAKPRTDIAIGARV
FHEKFGYGTVAGQEGNKLEIDFEQSGRKRVIDSFVKIA
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccgccagcaacgatcccctgatcgacggcctcaacgcgccccagaaggaggcc
gtgctgaccaccgaagggccggtcctgatgctggcaggcgcaggcacgggcaagaccgcc
gcccttacccggcgtcttgccaacatcatccgcaatcgccttgcatggccaagcgaagtg
ctgtgcgtcactttcaccaacaaggccgcgcgcgaaatgcgcgaccgggtcggccagctc
gtcggccccgcggtcgagggcatgccgtggctcggcaccttccacgccatcgctgccagg
atgctgcgccgccatgccgaactggtggggctgcaacccaactacacgatcatcgacacc
gacgatcagctgcgcctgctcaagcagctcatccaggccgaaggcgtcgatgaaaagcgc
ttccccgcccgccagcttgccgggtgcatcgatcgctggaagaaccgcgggctgaatccg
caggatctcgatgcagcggagaacgaagcctatgccaacggccgcggccagaagttctac
agcctctaccaggaccgcctgaagacgctgaacgcctgcgacttcggtgacctgctgctg
cacatgctcaacatcctgcgcacccatcgcgaggtgctggagcagtaccagcagcgcttc
aagtacgtcatggtggacgaatatcaggacaccaaccaggtccagtacctgtggctgcgc
ctgatcgcgcagggccgccagaacatttgcgtggtgggtgacgacgaccagtcgatctat
tcatggcgcggcgcagaagtcgccaatatcctgcgcttcgaaaaggattttcccggcgcg
aaagtgatccggctcgaacagaactaccgctcgacgcccgagatccttgccgctgcctcg
ggcctcatcaacgagaacagccagcgcctcggcaagaccttgtggaccgagcgccacccc
ggggacaaggtgcgcgtgatcggcgtctgggatgcaccggaagaagcgcgccgcgtgggc
gacgagatcgagcggctcgagcgcgagggcgccccgctggaccagatggccattctcgtg
cgcgcgcagtaccagacgcgcgagttcgaagaccgcttcatctcgatcggcctcaagtac
cggatcgtcggcggtttccgtttttacgaacgcgccgaaatccgcgatgcgctggcctac
ctgcgcgttatcgcccagcccgccgacgacctcgctttcgagcgcatctacaatgccccg
aagcgcggacttggcgccaaggcgctggagaagctgcaccagctcgcgcgccgccagggc
atccctcttgccgcggccgccatcgaaatcgtcgataccgacgaactgcccgcccgtgcg
cgcaacactttcctgtcgctgatgcgcgacttcgcccggtggcgcgatctggagaagacg
gagaacccggcggacctgatgcgcaccgttctcgacgaaagcggctataccgacgcgctg
caggccgagcggacagccgaagcctccggacggctggaaaaccttgtcgagcttgcccgc
gccatggaagagtacgaaagcctcggcgacttcctcgagcatgtcagcctcgtcatggac
aacgacgcggccagcgacgaggaaaaggtcacgatcatgaccatgcacgccgccaagggc
ctggaattcgaccacgtattcctgcctggctgggaggaaggcgtgtttccctcgcagcgt
tcgctggacgaaggcggccttgccagcctcgaggaagagcgccgccttgcctatgtcgcg
atcacccgggcgcgccgcaagtgcaccatcctccacgccgccaaccgccgcatctacggc
cagtggaccagctcgatcccctcgcgcttcatcgccgaattgcccgaagatcacgtcgaa
agcgagacgacgctcaccggcggtgcttcgctgtggcgcgcgcagtggtcagaacatgcc
gatcccttcgccgacgtcgcccgcgcccaacccgcgcgcacgatgacgcgcggcccgggc
tggcagcgggctgccgcacgcgaattcgaaacgaaaccccgccggatcgccgagacgacg
cgcagcgcggccagcttcgcggccaagccgcgcaccgatatcgccatcggcgcgcgcgtg
tttcacgagaagttcggctacggcaccgtggccgggcaggaaggcaacaagctggagatc
gacttcgagcagtcgggccgcaagcgcgtgatcgacagcttcgtcaagatcgcctga
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