Novosphingobium sp. PP1Y: PP1Y_AT30432
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Entry
PP1Y_AT30432 CDS
T01515
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03030
DNA replication
npp03430
Mismatch repair
npp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PP1Y_AT30432
03430 Mismatch repair
PP1Y_AT30432
03440 Homologous recombination
PP1Y_AT30432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npp03032
]
PP1Y_AT30432
03400 DNA repair and recombination proteins [BR:
npp03400
]
PP1Y_AT30432
Enzymes [BR:
npp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PP1Y_AT30432
DNA replication proteins [BR:
npp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PP1Y_AT30432
DNA repair and recombination proteins [BR:
npp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PP1Y_AT30432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CCA93802
UniProt:
F6IGV8
LinkDB
All DBs
Position
complement(3199422..3203027)
Genome browser
AA seq
1201 aa
AA seq
DB search
MPFSPFVPLRIFSSFTMLDGSIDPKAIAKLAKERKFPAIAICDRNGLYGAPTFAGACMDA
GVQPVVGTFLAVARPGAVAQGQDLPIDWLALFAQNEDGWLNLCRHVSRAHLDRPLELDPH
VELESLRGHTDGLICLTGGNEGALARLYADDRPEAAERYCDTLQGLFGDRLYIEITRTGE
PEEDASEEDLIALAYERDIPLVGSNPAQYSEASFHSAHDGMLCIANSTQVDAPDRPRSSS
ERWVKPVDVMQELFADLPEAIANTMVVAQRCAFAPPRRKPLLPSLAGDREGEARMLVDDA
RRGLARRLLPYWPDVSEDELDEALAFKGDERKAAYETLREKGVSEDFLAYADRLDFETQI
IIGMGFPGYFLIVADFIKWAKDNGIPVGPGRGSGAGSLVAWALTITDLDPLRLGLLFERF
LNPERVSMPDFDIDFCETRRGEVIRYVQRKYGHDHVAQIITFGKMKARAVLRDCGRILQM
GYGRVDSLCKMVPNHPTDPWNLTEALNGRKEHGVTKDPPVAEFRREYDTDPEVRRMVDLA
VQLEGLPRNSSTHAAGVVIGDRPLEKLVPLYRDPRSDMPVTQFDMKSVEDTGLVKFDFLG
LKTLSVLRKACDLLERRGIRIDLSSLGWDDPAVYELLKRGDTVGVFQLESEGMRRTLAAV
KPTNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEQIEFPHEKLEGILAETYGIFVYQEQV
MQAAQILAGYSLGDADLLRRAMGKKKKEEMDKQRARFVAGCKELSDIDEPKANELFDLID
KFAGYGFNKSHAAAYALLAYHTAWLKAHYPHEFYAAAMCFDMHQSEKLAIFVDDARRNGI
ELAAPDINMSEAEFIVEETHDSHAVRYALAGIRNVGEKAMDAIVGERQANGKFVSLHDLF
KRAPAGSMNRRQLESLGAAGALDSLEPNRAKVLANADLLLAVADEASRSRSSGQAGLFGG
DDHAEPGLRLVDAEPWSRMDQMAKERENFGFYFAAHPVEQFRAVASANGARTHASLIAGG
SGGGGRSGAVMAALVENVQKRKTRKGKDFVMADFSDQSGNFSASCFEESLVENFVKWAKE
GTCVLLNVELDSPSADEPPRVTVRGARPLAEVKADARMLLRLDIDRVEAVQELALLMRPG
SPGGGEVIANLKLGNGREQKVRLGRDFALDGEFAEQLATIDGLSNISLTARRGPEGLRRA
A
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgccgttctcgcctttcgtcccgcttcgcatcttctctagcttcacgatgctggacggc
tcgatcgaccccaaggcgatcgccaagctggccaaggagcgcaagtttccggccatcgcc
atctgcgaccgcaatggtctctatggcgccccgactttcgccggtgcctgcatggacgca
ggggtgcagcccgttgtcgggacctttctcgccgtcgcccgtccgggggcggttgcgcag
gggcaggatctgccgatcgactggctggcgctgttcgcccagaacgaggatggctggctc
aacttgtgccgccacgtcagccgcgcccacctcgaccggccgctggaactcgatccccat
gtggaactggaatcgctgcgcggccataccgatggcctgatctgcctcaccggcggcaac
gagggcgcgctggcgcggctttatgccgacgaccgtcccgaggcggcggagcgctactgc
gataccctgcagggcctgttcggcgaccgcctctacatcgagattacccgcaccggcgag
cccgaggaggatgcctccgaggaagacctgatcgcgcttgcctatgagcgcgacattccg
ctggtcgggtcgaacccggcgcaatattccgaggcgagctttcattccgcgcacgatggc
atgctgtgcatcgccaactccacgcaggtcgatgcgccggaccggccgcgctcttcgtcc
gagcgctgggtcaagccggtcgatgtcatgcaggagcttttcgcggacctgcccgaagcc
atcgccaacaccatggtcgtcgcccagcgctgcgcctttgcgccgccgcgccgcaagccc
cttctgccaagccttgccggcgaccgcgaaggtgaggcgcggatgctggtagacgatgcc
cggcgcggccttgcgcggcgcctgctgccctactggcccgacgtcagcgaggacgaactc
gacgaggcgctggccttcaagggcgacgagcgcaaggcggcttacgagaccctgcgcgaa
aagggcgtgagcgaggacttccttgcctatgccgaccgcctcgatttcgagacgcagatc
atcatcggcatgggtttccccggctacttcctgatcgttgccgacttcatcaagtgggcc
aaggacaacggcattccggtcggcccgggccgtggttcgggtgccggctcgctggtcgcc
tgggcgctgaccattaccgatctcgacccgctcaggctgggcctgcttttcgaacgcttc
ctcaacccggaacgcgtctcgatgcctgacttcgatatcgacttctgcgaaacccgccgc
ggcgaagtgatccgctacgtccagcgcaagtacggccacgaccacgtcgcgcagatcatt
accttcggcaagatgaaggcccgcgcggtgctgcgcgactgcgggcgcatcctgcagatg
ggctacggccgcgtcgattcgctgtgcaagatggtgcccaaccatccgaccgacccgtgg
aacctcaccgaggcgctcaacggccgcaaggaacacggcgtcaccaaggacccgccggtc
gccgagttccgccgcgaatacgacaccgatcccgaagtgcgccgcatggtcgacctggcc
gtgcagctcgagggcctgccgcgcaattcctcgacccacgcggcgggcgtcgtcatcggc
gaccgcccgctggaaaagctggtcccgctttaccgcgatccgcgttcggacatgccggtc
acccagttcgacatgaaatcggtcgaggataccgggctcgtgaagttcgacttcctcggc
ctcaagaccctgtcggtactgcgcaaggcctgcgacctgctcgaacggcgggggatcagg
atcgacctgtcgagcctcggctgggacgatccggccgtctacgaactgctcaagcgcggc
gacacggtcggcgtgttccagctggaatcggagggcatgcgccgcaccctggcggccgtg
aagccgaccaacttcggcgacatcattgcgctagtctcactgtatcgtccgggaccgatg
gacaacatcccgctcttcggccgccgcaagaacgggctggagcagatcgagtttccgcac
gaaaagctcgagggcatcctcgccgaaacttacggcatcttcgtctatcaggagcaggtc
atgcaggccgcgcagatcctggcgggctattcgctcggcgatgcagacttgctgcgccgc
gcgatgggcaagaagaagaaggaggagatggacaagcagcgcgcccgcttcgtggccggc
tgcaaggaactatccgacatcgacgagcccaaggccaacgaactgttcgacttgatcgac
aagttcgccggctatggcttcaacaagtcgcacgcagccgcctacgcgctgctcgcttat
cataccgcttggctgaaggcgcattacccgcacgaattctatgcagcggccatgtgcttc
gacatgcaccagtcggaaaagctggcgatcttcgtggacgatgcacggcgcaacggcatc
gaactggccgcgcccgacatcaacatgtcggaagcggaattcatcgtcgaggaaacccac
gacagccacgccgtgcgctatgccttggcgggcatccgcaacgtcggtgaaaaggcgatg
gacgcgatcgtcggggagcgtcaggcgaacggcaagttcgtcagcctgcacgacctgttc
aagcgcgctccggccggatcgatgaaccgccgccagcttgaaagcctgggcgcggccggt
gcgctcgacagcctcgagccgaaccgtgcgaaggtgctggccaatgcggacctgcttctg
gccgttgccgatgaagcctcgcgcagccgttcgagcgggcaggcgggcctgttcggcggc
gacgatcacgccgagccggggctgcgtctcgtcgatgccgaaccctggagccggatggac
cagatggccaaggagcgcgagaatttcggcttctacttcgccgcccacccggtcgagcag
ttccgcgcggtggcctcagccaatggtgcgcgcacgcacgccagcctgatcgccggcggc
tcgggcggcggcggacgatccggcgcagtcatggctgcgcttgtcgagaacgtgcagaag
cgcaagacccgcaagggcaaggacttcgtcatggccgacttctcggaccagtcggggaat
ttctccgcgtcgtgcttcgaggaaagcctggtcgagaacttcgtgaagtgggcgaaggaa
ggcacttgcgtcctgctcaacgtcgaactggacagtccgagcgcggacgagcctccccgg
gtcacggtgcgcggggcgcggccactggccgaagtgaaagccgatgcgcgcatgctgctg
cggctcgacatcgaccgggtggaggcggtgcaggaattggcgctgctgatgcgtcccgga
tcgcctggcgggggcgaggtcatcgccaacctcaagctgggcaacggacgtgagcagaaa
gtgcggctgggccgtgacttcgcgctcgacggcgaatttgccgagcagctcgcgacgatc
gatggcctctccaacatttcgctgactgcccgccgcggcccggaagggctgcgccgcgcg
gcctga
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