Novosphingobium sp. PP1Y: PP1Y_AT36749
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Entry
PP1Y_AT36749 CDS
T01515
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP1Y_AT36749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npp03019
]
PP1Y_AT36749
Enzymes [BR:
npp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PP1Y_AT36749
Messenger RNA biogenesis [BR:
npp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PP1Y_AT36749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
CCA94367
UniProt:
F6IJW3
LinkDB
All DBs
Position
3852717..3854198
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AA seq
493 aa
AA seq
DB search
MSYFSELGLAEPILRALEAKGYTDPSPIQRKAIPSLLEGRDLLGIAQTGTGKTAAFSLPS
LHRLAADPKPRNNAGCRMLVLSPTRELAAQIADNMRGYAKFLNLSVQCIFGGVPVGKQAR
ALERGCDILVATPGRLLDLIDNRALTLRHVEIFVLDEADQMMDLGFIVPLKRVAALLPKQ
RQSLFFSATMPQAIAELGKQFINNPVKVEVAPQSTTAERVEQYATFINQAEKQALLTLRL
REGLAPDAAEKAEHGAIDRALVFTRTKHGADRVVRHLTAAGIPAAAIHGNKSQAQRTAAL
GGFRQGTVRVLVATDIAARGIDVSGVSHVYNFEIPNVPEQYVHRIGRTARAGADGVAISF
VAPDEKPYIRDIERLTRIKLAPLPLPEDFQKQAARLPAPARKAPAEPQGSGNRRGQQSRG
GNGRSGEERRRERPRGDRVHGERPQGERPRHDGQRSDRRAEHVSEEGGERKRRFRPRGPN
SVGAHKGKVRRAG
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgtcctatttctccgaacttggccttgccgagcccattctccgcgcgctcgaggccaaa
ggttacaccgatccctcgccgatccagcgcaaggcgattccttcgctgctggaaggacgc
gacctgctgggcatcgcccagaccggcaccggcaagactgccgcgttctcactgccctcg
ctgcaccgcctggccgccgatcccaagccgcgcaacaatgccggctgccgcatgctggtc
ctttcgcccacgcgtgaactggcggcacagatcgccgacaacatgcgcggctatgcgaag
ttcctgaatctttcggtgcagtgcatcttcggcggcgtgccggtgggcaagcaggcccgt
gcgctggaacgcggctgcgacattctcgtcgccacgccgggccgcctgctcgacctgatc
gacaaccgcgcgctgacgctgcgccatgtcgagatcttcgtgctcgacgaagccgaccag
atgatggacctgggcttcatcgtgcccctgaagcgcgtcgccgcactgctgcccaagcag
cgccagagcctgttcttctcggccaccatgccgcaggcgatcgccgaactgggcaagcag
ttcatcaacaacccggtgaaggtcgaagtcgcgccgcagtcgaccacggccgagcgcgtc
gaacagtatgcgacgttcatcaaccaggcggagaagcaggctctgctgaccctgcgcctg
cgcgaagggctggcgcctgacgcggccgagaaggccgaacacggcgccatcgaccgcgcc
cttgtcttcacccgcaccaagcacggcgccgaccgcgtcgtgcgccacctgaccgccgcg
ggcatcccggccgctgcgattcacggcaacaagagccaggcgcagcgcactgccgcgctt
ggcggcttccgccagggaaccgtgcgcgtcctcgttgccaccgacatcgccgcgcgcggg
atcgacgtttcgggcgtgagccacgtctacaacttcgagatccccaacgtgccggaacag
tacgtccaccgcatcggccgcactgcacgtgccggcgcggacggcgttgcgatcagcttc
gtagcgccggacgaaaagccctatatccgcgacatcgagcgcctcacccgcatcaagctg
gcgcctctgccgcttcccgaggacttccagaagcaggccgcccgcctgcctgcccccgcg
cgcaaggcaccggccgaaccgcaaggttccggcaatcggcgcggacagcagagccgtggc
ggcaatggtcgcagcggcgaagaacgccggcgcgaacgccctcggggcgatcgtgtgcac
ggtgaacggccgcagggtgaacggccccgtcacgacggccagcgttccgaccgtcgcgcc
gaacacgtcagcgaggaaggcggcgagcgcaagcgccgtttccgtccccgcgggccgaac
agcgtcggcgcgcacaagggcaaggttcgccgcgcgggctag
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