Novosphingobium sp. PP1Y: PP1Y_AT4126
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Entry
PP1Y_AT4126 CDS
T01515
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03030
DNA replication
npp03410
Base excision repair
npp03420
Nucleotide excision repair
npp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PP1Y_AT4126
03410 Base excision repair
PP1Y_AT4126
03420 Nucleotide excision repair
PP1Y_AT4126
03440 Homologous recombination
PP1Y_AT4126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npp03032
]
PP1Y_AT4126
03400 DNA repair and recombination proteins [BR:
npp03400
]
PP1Y_AT4126
Enzymes [BR:
npp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PP1Y_AT4126
DNA replication proteins [BR:
npp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PP1Y_AT4126
DNA repair and recombination proteins [BR:
npp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PP1Y_AT4126
NER (nucleotide excision repair)
GGR (global genome repair) factors
PP1Y_AT4126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DprA_N
HHH_5
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
CCA91367
UniProt:
F6IHB6
LinkDB
All DBs
Position
427066..429906
Genome browser
AA seq
946 aa
AA seq
DB search
MDPKQHLYLVDGSAYIFRAYHRLPPLTNPEGTPVGAVYGYTTMLWKLADDLNKADGPTHL
AVILDAGSKSFRNDIYEEYKANRPPPPEDLRPQFPLIRDATRAFSLPCIEEQGFEADDLI
ASYARAAAEQGWNVTIVSSDKDLMQLVGTCEKGGGKIDMLDTMKNQRIDIDEVVEKFGVP
PEKVGDVLALMGDSVDNVPGVYGVGPKTATKLIQDYGDLEAALAAAPEMKKSKLQERLIE
QAEQARLSKVLVTLKEDCNLPMPIEDFKLDAIPPEPLAAFLSTHGFTSLLKRLNGGAGSP
ERATQLNPAKPVTAGAGPAEGAARQSPPEFPALDYAAYECVQTLEALQAWVDKAAAAHLV
AVDTETSALDAMQADLTGVSLAIGPNEACYIPLGHGGSDMFAEKPQQVPLDKAIEALKPL
LENDAVLKVGQNIKYDLNVLARYGIAVAPVDDTMIESFCLDAGRSIDGIGGGHGMDELSE
RHLGHKPMAFKDLCGTGKKAIPFGEVPLDKATHYAAEDADVTWRLHTVLKPRLSEEGGTR
IYERVDRPLIPVVAQMERHGIKVDREKLAGLSSQFAETIGALEAEIHEAAGQEFTIGSPK
QLGEVLFDKLGYKGGKKGKSGQYSTDQSVLEKLAGEGAQVATKVLEWRQLSKLRSTYTEA
LQAAINPKTGRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRDCFVADSGNVLLA
ADYSQIELRLAAFMADVPSLKEAFANGEDIHARTAQEMFGTVDRDTRGRAKTINFAILYG
ISRWGLAGRLGVEADEAQAMIDRYFERFPGIQRYIAYTLEQVRERGYSETLFGRKTWFPR
ITSKNQAERQGSERAAINAPIQGTCADIIKRAMVRMQPELEQAGLGHVRMLLQVHDELVF
ELPEADVAAASQVIERVMASAAEPAVKLDVPLGVEIGSGSSWGAAH
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggatcccaagcagcacctctatctcgtcgacggctcggcctacattttccgcgcctat
caccgcctgccgccgctgacgaacccggaaggcacgccggtcggtgcggtctacggctac
acgacgatgctgtggaagctggcagacgatctcaacaaggcagacgggccgacgcacctg
gccgtcatcctcgatgccgggagcaagtcgttccgcaacgacatctacgaggaatacaag
gccaaccgtccgccgccgcccgaagacctgcgcccgcagttcccgctgatccgcgatgcg
acgcgcgccttttcgctgccatgcatcgaggaacagggtttcgaggccgacgacctgatc
gcctcctatgcccgcgccgcggccgagcagggctggaacgtcaccatcgtctcctcggac
aaggacctgatgcagctggtcggtacttgcgagaagggcggcggcaagatcgacatgctg
gacacgatgaagaaccagcgcatcgacatcgacgaggtggtcgagaaattcggcgtgccg
ccggaaaaggtcggcgatgtgctggcgctgatgggcgactcggtggacaacgtaccgggg
gtctatggcgtcggccccaagaccgcgaccaagctgatccaggactacggcgatctcgaa
gcggcgctggctgccgcgcccgagatgaagaagtcgaagctgcaggaacggctgatcgaa
caggccgagcaggcccgcctttcgaaggtgctggtcacgctcaaggaagactgcaacctg
ccgatgccgattgaggacttcaagctcgacgcgatcccgcccgagcctttggcagcattc
ctctcgacgcatggtttcaccagcctcctgaagcgcctcaatggcggtgcgggcagcccc
gagcgcgcgacccagctcaacccggccaagccggtcacggcgggcgccggtcccgccgaa
ggcgccgcgcgccagtcgccgccggaatttcccgcgctcgactatgccgcctacgaatgc
gtgcagacgctcgaggctctgcaggcctgggtggacaaggcagccgcggcgcatctcgtc
gccgtcgataccgagacttccgcgctcgatgccatgcaggccgacctgaccggggtcagc
ctggcgatcgggccgaacgaggcctgctacattccccttgggcacggcggcagcgacatg
ttcgccgaaaaaccgcagcaggtgccgctcgacaaggccatcgaggcgctcaagccgctt
ctggaaaacgacgcggtgctcaaggtcggccagaacatcaagtacgacctcaacgtactc
gcccgctacggcatcgccgtggcgccggtcgacgatacgatgatcgagagcttctgcctc
gatgccggtcgctccatcgacgggatcggcggcggtcacggcatggatgaactgtccgag
cgtcacctcggccacaagccgatggcgttcaaggatctttgcggcaccggcaagaaggcg
atccccttcggcgaagttccgctcgacaaggcgacccactatgcggccgaagatgccgac
gtcacctggcggctgcacaccgtgctcaagccgcgtctctccgaagaaggcggcacccgc
atctacgagcgggtcgatcgcccgctgatccccgtcgtcgcgcagatggagcgccacggg
atcaaggtcgaccgcgagaagctggccggtctttccagccagttcgccgagacgatcggc
gcgctcgaagccgagatccacgaggccgcagggcaggaattcaccatcggcagccccaag
cagctgggcgaagtactgttcgacaagctcggctacaagggcggcaagaagggcaagtcg
gggcagtattccaccgaccagtcggtgctcgagaagctcgccggcgaaggtgcgcaggtc
gcgaccaaggttctcgaatggcgccagctctccaagctgcgctcgacttataccgaggcg
ctgcaggcagccatcaacccgaagacgggccgtgttcataccagctattcgctggtcggc
gcgcagaccggccgcttgtcctcgaccgatcccaacctgcagaacattccgatccgcacc
gagataggccgccagatccgcgactgcttcgtcgcggacagcggcaatgtcctgctcgcg
gccgactactcgcagatcgagctgcggctggccgcgttcatggccgacgtgccgagcctg
aaggaagccttcgccaatggcgaggacatccacgcgcgcacggcgcaggagatgttcggc
acggtcgatcgcgacacgcgcggccgggccaagacgatcaacttcgcgatcctctacggc
atttcgcgctggggccttgcgggccgtctcggcgtcgaggccgacgaggcgcaggccatg
atcgaccgctacttcgaacgcttccccggcatccagcgctatatcgcctacacgctcgag
caggtgcgcgagcgcggctattcggagacgctgttcggccgcaagacctggttcccgcgt
atcacctcgaagaatcaggccgagcggcagggtagcgagcgcgccgcgatcaatgcgccg
attcagggcacatgcgccgatatcatcaagcgcgcgatggtgcgcatgcagcctgaactg
gaacaggcgggcctcggccacgtgcgcatgctgctgcaggtgcacgacgaactggtcttc
gaactgcccgaagccgatgttgcggcggcctcgcaagtcatcgaaagggtcatggcgagc
gcggcggaaccggcagtcaagctggacgtgccgctgggcgtggagatcggttcgggatcg
agctggggcgcggcgcactga
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