Nanorana parkeri (Xizang Plateau frog): 108784572
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Entry
108784572 CDS
T04897
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
npr03009
]
108784572 (PDCD11)
Ribosome biogenesis [BR:
npr03009
]
Eukaryotic type
90S particles
Other 90S particles
108784572 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Suf
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
OB_RRP5
TPR_14
TPR_19
TPR_15
ARM_TT21
ANAPC3
Mad3_BUB1_I
TPR_12
Motif
Other DBs
NCBI-GeneID:
108784572
NCBI-ProteinID:
XP_018408921
LinkDB
All DBs
Position
Unknown
AA seq
1792 aa
AA seq
DB search
MEECFPRGGTVKTSKETDIKKRPREDDNLFSTFHEEEEASIRKKKKKELKETQTAVQHEK
SSFTKVKALELLQYKDLSVGMLFLGCIKEVKDFELVISLPYNLIGFVQATNICEAYTKML
NKQVEKEEPLEGLMPLSELYSPGMLVRCVISNLETTSGGFNSIKLSLNPKLINGDLVPSS
LHTGMYLTGLVSSVEDHGYLMDLGISGTKAFLPLKKAEVFINQRTKGTALTVGQYLDCVI
DQVKNGGRVLRLSASQSEVAAAIATDEQKWTLNNLLPGLVVKAEIQKIFHDHITVSFLSS
YTGLVDFLHLEPKKVNLYQKDQIVKACILWIDKTSKTIRLTLRKTFLQPGNLIKQLSSNW
NGTVHENCTVKTLYKNAGAVFELDEETTAFAPKFHLLSKDASNLNKYKEGTVHTGRVTGF
SPMDETIVLSLKERVIEEPFWKHEDIHAGQLLEGTVNKIDTEGITVNITKRISGLVPNLH
MADVTLKHPEKRYTPGKTIKCRVLNVDPSAKKLILTRKKTMINSKLPVIASFHDAKPGMI
THGFIWAVKDFGCIVKFYNNVTGLAPARELSSQFIPSIQDAFYKGQVIKVRVLECDPEKE
TLILSFRIIEENDNEDQEDSTVWRNHLNWQEPGKIVDVRIASKTDTELKVLILPKETPAV
LPKFHLSDHMANCELLFHCFKEGDELSQVMCLNSPKGQTILTRKPTIISFVEEGSSVKDF
SEVQVGMFLTGFVRNIMSYGVFVEFLGGLVGLAPISEVSNTFVTDLNDHFVQGQTVVAKV
TNVDEQKKRFLLTLKMSECASDDCSAENVSRIRQCFNELQFSRDLIKKTHEVDEGKTVFS
LAPGKKLILVVEKLEENGSVLFNPGKVPGAQMISAVQHKDKEKPLTVGQKVKAVVLHVDI
LKAHVYVSVDEALVKKCNENVKNSVHSAFVQHLSEEFAVVSLNDTSNLAAVPLKRHFNDT
FRFKTERLSLGQKISVTILSGDAHEHGLLLAVQNSSSGKEKLPMNFAKRTSCLGELITGT
VKSIKPTSVLVSITDKLIGTIHASQIMEHVPAGVMPTSKLRPKQSVTCRVIGGRDVKTHR
FLPISHPHLMRSILELSVLPSLLSTEATVEKQKPLKMYSSGDVLTCYVAKYIKESECLEV
ELSPGIRGKVERLLLASSLKVLRHPEKHFKKGQALSATVVHVDDSRKKLSLSLTDIHTLT
EGCVTYGCVKSVLPSLGLQITLPFGKTGRANFFQLNDCYDEVSLEKFTVGMFVRCCILTV
GSKIDVSLRESRTNPKSVSKQIDEDIPSIDCLKEGQLVKGFVSGITAKGVFLKISSSTDG
HILFKNITSYYVKDLEMYKPHIFEGKLLTAKVISIDKEENHLELSLLSKDTGNPDIIPES
AGFTLRCKKGDKNKRRRTDTESEDKIPNKKKSRQSQDDEDSGVEVHYREQETENEVKVKQ
PGSQEKTSSAGSKSPPPRLQVSSGFSWDVSLNTLKTPLTDGKESRSDSEEDEEERPKKKS
SQTKQEKVKKQAGKDATDTSQEPKSVNEFERLVIGSPNISANWIQYMDFHLQATELEQAR
AVAERALQTIYFREEQEKLNVWVAMLNMENTYGTEETLLKVFERAVQYNDPLKAFQHFVD
IYIKSEKFKEAGELFNTMIKRFKQEKSVYWKYATFLLKQGQSESAHRLLQRALKCVPEKE
HVDLISKFAQLEFNLGDPVRAKALFESTLSSYPKRTDIWSVYIDMMVKHENQKEIREIFE
RVIHLSLAAKKIKFFFKRYLEYEKKHGNEKTVQAVKEKALQYVESKSSVDTS
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtgttttccccgtggggggaccgtgaagacgtctaaggaaacggacattaaa
aagaggcctagagaggatgacaacttgttttctaccttccatgaagaagaggaggcatct
attaggaagaagaagaagaaagaactgaaggaaactcaaacggcagtccagcatgaaaag
agttcattcacaaaagtgaaagcactggagctattacagtataaggacctgagcgttggg
atgctgtttcttggatgcatcaaagaagtcaaagattttgaactggttataagcttgccc
tataatctcataggctttgttcaagcaacaaatatctgtgaggcctacacaaaaatgctt
aataaacaagttgagaaagaggagcctctggagggtctaatgcctctttctgaattgtat
tctccgggaatgctggtccgatgtgtcattagcaatttggagaccacatctggcggtttc
aacagcatcaaattgtccttgaacccaaaactcatcaatggggatcttgttccatcttct
ctgcacactggcatgtatctcacaggtcttgtgtccagcgtggaggaccatggttatctc
atggatttgggcattagtggtactaaagctttcctacccctaaagaaggctgaagttttt
ataaaccagagaaccaaaggaactgcactgacagtagggcaatatctagactgtgtgatt
gatcaggtgaagaatggtggaagagtcttgcgtctgtcagccagccagtccgaagtggct
gcagccattgccacagatgaacagaagtggactttgaataacctgcttccgggcttagtg
gtgaaagctgagattcaaaagatcttccatgaccacatcactgtatccttcttgtcatcc
tacacgggattagtggatttcttgcatttggaacccaaaaaagtaaacttataccagaaa
gatcagatagttaaagcttgcatcctgtggattgacaaaacttccaagaccataagactg
accttacgcaagactttcctgcagccagggaacctgataaagcagctttccagtaactgg
aacggcactgttcatgagaattgtacagtaaaaacattgtataagaatgcaggagctgtg
tttgagctggatgaggaaacaacggctttcgcacctaaattccatctgctttcaaaggac
gcaagtaatctaaataagtataaagaaggaacagtccacactggacgagtaacggggttt
agtcccatggatgagacaattgtgctttctttaaaggagagagtcattgaagaacctttt
tggaagcatgaggacatacatgctggacaacttctagagggaactgttaacaagatcgat
actgaaggaataaccgtgaatatcaccaaacgcattagtggtctcgtaccaaatctccac
atggcagatgtcaccttgaagcatccagagaagagatacactcctgggaagaccatcaaa
tgccgggttctaaatgtggatccatcagccaaaaagctgatcctcacccgaaagaaaacc
atgatcaattcaaaattgccagtaattgccagtttccatgatgcaaaacctggcatgatc
actcatggtttcatctgggcagtgaaagactttggatgcattgttaaattctataataat
gtcactggattggcaccagctcgagagttaagctcgcagtttatcccatcaatacaagac
gccttttataagggacaggtgatcaaggtgcgggtgctggagtgtgaccctgaaaaagag
acattgattctgtccttcaggattattgaagaaaacgacaatgaagatcaggaagacagt
acagtatggagaaaccatttaaattggcaagaacctggaaagatagtagacgtgagaatt
gcaagcaagaccgatacggagttgaaagtattaattctgcctaaggagaccccagcagta
cttcccaaatttcacctctcagatcatatggccaactgtgagcttctcttccactgtttc
aaggagggtgacgagctaagccaagtgatgtgtctgaacagccccaaagggcaaactata
ttgaccagaaaacccacaatcatctcctttgtggaggaggggtcttctgtaaaagatttc
tctgaagttcaggttggaatgtttctcactggatttgtccgaaacatcatgtcctatgga
gtgtttgtggaattcttaggtggactggtcggactggcccccatctcagaagtcagtaac
acgtttgtgaccgacctcaatgaccattttgtacaagggcagactgttgttgccaaggta
acgaacgtcgatgagcaaaaaaaacgctttctgttgaccctaaagatgtccgagtgcgcc
tctgatgactgctcagccgagaacgtctcaaggatcaggcaatgtttcaatgagctgcag
ttttccagggacctaataaaaaaaacacatgaagtggatgagggaaagaccgtcttttct
ctagcaccagggaaaaaattgatcctcgttgttgaaaaattagaagaaaacggttcagtt
ctgttcaatcctggcaaagtccctggagcccagatgatatcagctgttcaacacaaggac
aaagaaaaacctttaactgtaggacagaaagtcaaggctgtggttctacatgttgacata
ttgaaggcccatgtttatgtctctgtggatgaagctttggtaaagaaatgtaacgaaaat
gtaaaaaattcagtgcattccgcattcgtacagcatttgtcagaagaatttgcagtcgtg
tctttgaatgatacttcgaacctcgcggctgtcccacttaagcgtcactttaatgacact
ttccggtttaagacagaaaggctaagtctaggacagaaaatctcagtgaccatattgtcg
ggggatgcccatgaacacggactcctattggcagtgcagaattccagctcaggaaaggaa
aagctgccaatgaactttgcgaaacgaacatcgtgtcttggagaattgatcaccgggact
gtgaaaagcatcaagcccaccagtgtgttggtgtcaattacagataaactaattggcacc
atccatgcctctcagatcatggagcatgttcctgcaggtgtcatgcctacatccaagctg
aggcctaagcagagtgtgacttgtcgtgtgattggaggacgagatgtcaagacacacagg
ttccttcccatttctcacccacacctgatgcggtcaattctagaactcagtgttcttccc
agtcttttgagtactgaggcgacagttgaaaagcaaaaacctctgaaaatgtactcatca
ggtgatgtgctgacctgctatgtagccaagtatatcaaggagagtgaatgtctagaggtg
gaactctctcctgggattcgtggcaaagtagaacggctgctcctagcatcttctttgaag
gttttgaggcatccagagaaacatttcaagaaaggccaggcgctgtccgccactgtggtt
cacgtggatgactctcgtaaaaagctttccttgtcattaacagacatccacactctgaca
gagggttgtgtcacttatggctgtgtgaagagtgtacttcccagtttaggcctacagata
accttaccatttggaaagaccgggagagctaatttctttcagttaaacgactgctatgat
gaggtctccctggagaagttcaccgttggaatgtttgtaaggtgttgcatactcactgtt
ggaagtaaaatagatgtgtccctaagagaatctcgaacaaatcctaaaagtgtcagcaaa
cagatagatgaagacattccttctattgactgtctgaaggaagggcagctcgttaaaggt
tttgtcagtggaattacagcgaaaggagtgtttttgaagatatccagctcaactgatggt
catattttgttcaagaatattacctcttattatgttaaagatctagagatgtataagccg
cacatttttgaaggaaagttgcttactgccaaggttatttccatagataaagaggagaat
cacttagagctgtcacttctttctaaggatactggaaatcctgatattattccagagtct
gctggcttcaccttaaggtgcaagaagggagataaaaacaagagaagacggacagacact
gaaagtgaagacaagatccctaacaagaagaaatcccggcagtcacaggatgatgaagac
agtggagttgaggttcattaccgagaacaggagacggaaaatgaggttaaggttaagcag
cctgggtctcaggagaagacatcttctgctggcagtaagtctcccccacctcggctgcag
gtttcctccggcttttcttgggacgtcagtctaaatactctcaaaactcctttaaccgat
ggaaaggaaagccgctcagacagtgaggaagatgaagaggagcgccccaagaaaaagagc
agccagacaaaacaggaaaaagtgaagaaacaagctggaaaagatgccacagatacaagt
caggaaccaaagtccgttaatgaatttgaacgcctcgtcattggctcgcctaacatctct
gctaactggattcaatacatggatttccacctccaggccacagagctggagcaagcacga
gctgtggcagaaagagcgctgcagactatttacttcagggaggagcaggaaaagcttaat
gtatgggtggccatgctgaacatggaaaatacatatggcacagaagagaccttactgaag
gtgtttgaacgagccgttcagtacaacgatccattaaaagcattccagcactttgtggac
atttacataaagtcagaaaagtttaaggaggcaggtgagctgttcaacacaatgataaag
cgattcaaacaggaaaagtctgtgtattggaaatatgccacgtttcttcttaagcaaggc
cagtcagagtctgctcatcgcctattgcagcgggcactgaaatgtgttccagaaaaagag
catgttgatttaatttcaaagtttgcccagttagagttcaacctgggtgatcctgtgcga
gccaaggctttgtttgaaagcacactgagcagctatccaaaacgaacagacatctggtct
gtatatatcgacatgatggtaaagcatgaaaaccaaaaagaaatcagagagatatttgag
cgcgttatccacctcagtttggcagcaaaaaagatcaaatttttcttcaagcgttatcta
gagtatgagaagaaacacggcaatgagaagaccgttcaggctgtgaaggagaaggctctt
caatacgtcgaatcgaagagttctgtggacacaagctag
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integrated database retrieval system
