Nanorana parkeri (Xizang Plateau frog): 108784819
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Entry
108784819 CDS
T04897
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03013
Nucleocytoplasmic transport
npr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108784819 (UPF2)
03015 mRNA surveillance pathway
108784819 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108784819 (UPF2)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108784819 (UPF2)
mRNA cycle factors
P-body specific factors
108784819 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF4835
DUF1722
Motif
Other DBs
NCBI-GeneID:
108784819
NCBI-ProteinID:
XP_018409245
LinkDB
All DBs
Position
Unknown
AA seq
1253 aa
AA seq
DB search
MPAERKKLSSMEERDSVKDSSEKRPTSSRERVKDEKSGSKRDQSKVTEEKKKKPDDERRK
KEDKDVRKKEDAIAKIEEEEKQVQDEEKKAADDQEAAANQLKEKEEAHQLHQEAWERHLA
RKELRSKNQNAPEQRPEEHFFSKLDSSLKKNTAFVKKLKTITEQQRDALSHDFNGLNLSK
YIAEAAASVVEAKLKISDVNCAVHLCSLFHQRYADFAQSLLQVWKKHFEARKEDKTPNIT
KLRTDLRFIAELTIIGIFTDKEGLSLIYEQLKNIINADRESHTHVSVVISFCRHCGDDIA
GLVPRKVKHASEKFGLNFPPSEIITPEKQQPFQNVLKEYFTSLTKHLKRDHRELQNIERQ
NRRILHTKGELSEDRHKQYEEFATSYQKLLSNSQSLADLLDENMPELPQDKPVTEEHGPG
IDIFTPGKPGDYDLEGGIWEDEDARNFYENMIDLKAFVPAILFKDNEKSAQGKDLGKDEL
KDSKDCKESEVPTTEELELELEALDINDDPMELEGIEETEDLTKKLLDEQEQEDEEASTG
SHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPF
YARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSK
TDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLEQMMRKKQAMHLD
ARYVTMVENAYYYCNPPPAEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLSWQ
DPEVKEYVICSMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQ
PKFNQRRISSAKFLGELYNYRMVESAVIFRILFSFISFGVNCDGTASPLDPPEHLFRIRL
VCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKGLDVWTKDYPFPIDIDYMISDTLE
LLRPKMKLCNSQSEAMRQVLDLEREFLVKLGLVTDKDSKHSLTEGDALEDEDDEEEEEAG
AETEEQSGNESEMNEPEEDDASENEEDEREEEEEENTDYMTDSNKENETDEENTEVTMKG
GGIKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGHAFVSP
EGEADCGDTMPFVMLTRRGNKQQFKILKVPMSSTLAANHWNQQQVEQEERMRMKKLTLDI
NERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgaacgtaagaagctgtcaagcatggaggagagagattctgttaaagactct
agtgagaaaaggccaacaagtagcagagagagagtcaaagatgagaagtcaggcagcaaa
agagaccaatcaaaggtcactgaggagaagaaaaagaaacccgatgatgaacgacgcaag
aaagaggataaggatgttagaaagaaagaggatgctatagcgaaaattgaggaagaagaa
aagcaagtgcaagatgaagagaagaaggcggctgatgatcaagaagctgctgcaaaccag
ttaaaagagaaagaagaagcacatcagctgcaccaggaagcctgggagcgtcacctggcc
aggaaagagcttcgcagcaagaatcaaaacgctcctgaacaacgacctgaagaacacttc
tttagcaaactggactccagcctcaagaaaaacactgcctttgtgaagaagcttaagacc
attactgagcagcaaagagatgcgttatctcatgatttcaatggccttaacctaagcaaa
tacatagcggaagccgccgcttccgtagttgaagcgaagcttaaaatttctgacgttaac
tgtgcagtccatttgtgttctctgtttcaccagcggtatgcagattttgctcagtctctc
cttcaggtatggaagaagcattttgaggctcggaaagaagataaaacgcccaatataact
aaacttcgaacagatttgcgcttcattgccgagttaacgattattgggatcttcacggac
aaagaaggcctctctttaatctacgagcagctgaagaatatcattaatgccgatcgggag
tctcatactcatgtgtcagtagtcatcagtttctgccgtcactgcggtgatgatatcgca
ggcttagttcccagaaaagttaagcatgcatctgagaaatttggtctgaactttccccca
agtgagatcataaccccagagaaacaacagcctttccagaatgtgttgaaggaatacttc
acttccctgacaaagcatctaaaaagggaccaccgagagctgcaaaacatagagcgccag
aacaggcgcatccttcataccaagggggaactgagtgaagacagacacaagcaatatgaa
gaatttgcaacatcttatcagaaattattgtcgaattcccagtccctcgctgatctcctg
gatgaaaatatgcctgagcttcctcaagacaagcctgtaacagaagaacacgggcccggt
attgatatattcacacctggaaagcctggtgattatgacttagaaggaggcatatgggaa
gatgaagatgctcgcaacttctatgaaaacatgattgaccttaaagcatttgtccctgcc
attctgttcaaggacaatgaaaaaagcgctcaaggcaaggaccttggaaaagatgagtta
aaagattccaaagactgtaaagagagtgaagtgcctacaacagaagaattagaactggaa
ttggaggctttggatataaatgatgatcccatggagctagaaggtatagaggaaactgaa
gacttaactaaaaaactcctcgatgaacaagagcaagaagatgaagaagcaagcactggc
tctcacttgaagctcatagtggatgcatttatacagcagttgcctaactgtgtcaatcgg
gatctgatagataaggctgcaatggatttctgcatgaatatgaacaccaaagcaaaccga
aggaaactggttcgagcgctttttattgttcctagacaaagattggatctgttgccattt
tatgcccgattggttgctacattgcacccatgtatgtcggatgtggcagaagacctttgt
tctatgttaaaaggggactttagattccatgtaaggaaaaaggatcagataaatattgaa
acgaagaacaaaaccgtgagattcattggagagcttaccaagtttaaaatgttcagtaaa
acagacactctgcattgtttaaagatgctgttgtcagacttttcacatcaccacattgag
atggcctgcaccctgcttgaaacctgtggacggttcctcttcaggtctccagactcgcac
ttgcgtaccagtgttctgttggaacaaatgatgcgcaagaagcaagccatgcacttggat
gcaagatatgtaacaatggtggaaaatgcctactattattgcaacccaccccctgctgaa
aagactgtgagaaagaagcgaccacctctgcaagaatacattcgaaagttgctgtataag
gacctctccaaggtcacaactgagaaggtcttacggcagatgaggaagttgtcttggcag
gatcctgaggtgaaagaatatgtcatctgcagcatgatcaacatttggaatgtgaaatac
aacagcatccattgtgtggctaacctcttggcaggcttggtgctttatcaggaggatgtt
ggaattcatgtggtagatggtgtgctggaagatatacgtctagggatggaggtaaatcag
ccaaagtttaaccagcgccggataagcagtgcaaaatttcttggagaactttataactat
agaatggttgaatctgcagttattttccgcatacttttttccttcatatcgtttggtgtg
aactgcgatggtactgccagtcctctcgatcctcctgagcacttatttcgcattcgatta
gtctgcaccattcttgatacctgtgggcagtactttgaccgaggctctagcaaacgcaaa
cttgattgcttcctggtttattttcagcgttatgtctggtggaaaaaaggtctggatgtg
tggactaaagattacccattccctatagacattgattatatgattagtgacacactggag
ctgctgagaccaaagatgaagttgtgtaactcgcaaagtgaagcaatgcggcaagtgcta
gatttggagcgagagtttcttgtaaaactaggtcttgtgactgacaaggattcaaaacat
tccttgactgaaggggatgcactggaggacgaggatgatgaagaagaggaagaagctggg
gcagagactgaagaacagtctgggaatgaaagtgaaatgaacgaacctgaagaagatgat
gcttctgaaaatgaagaagatgaaagagaggaagaagaggaggaaaacaccgattacatg
actgactcaaacaaggaaaatgaaactgatgaagaaaacactgaggtgacgatgaaagga
ggtgggatcaagcatgttccctgtgcagaagatgaagacttcattcaggctctagataag
atgatgctggaaaaccttcaacaacgcagcggagagtctgtgaaagtacatcagctggat
gttgccattcccttgcatctgaagagccagctgaagaaaggacatgcctttgtcagtccg
gagggagaggcagactgcggagacacaatgccgtttgtaatgctgaccagaagaggcaac
aaacagcagtttaaaattctgaaggtaccaatgtcttccacactggctgcaaatcattgg
aaccaacagcaagtagagcaggaggaaaggatgcggatgaaaaagctcacattggacatt
aatgagcgtcaagaacaggaggactatcaggaaatgctgcaatctttggctcagcgtcca
gctccagctaatactaacagggagcgtcggccccggtaccagcatccaaaaggggcacca
aatgcagatcttatcttcaagactggtggcagaagacgttga
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