Nanorana parkeri (Xizang Plateau frog): 108786290
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Entry
108786290 CDS
T04897
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
npr03000
]
108786290 (RC3H1)
04121 Ubiquitin system [BR:
npr04121
]
108786290 (RC3H1)
Transcription factors [BR:
npr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
108786290 (RC3H1)
Ubiquitin system [BR:
npr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108786290 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
PaaA_PaaC
Baculo_IE-1
zf-RING_4
Vesi_VP2
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
108786290
NCBI-ProteinID:
XP_018411044
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEARKCVEELALYLKPLSTARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVKTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPTGAIHSDE
GPMDLPGRKQAGLPNGIVSGGSVTQLISRGTDSGYESVLKPVKLDHLSNSAPGSPPELHD
SVTKTSIASLPVSSHPPPQRISGDLPPLPVSKQIQMVPRGSQIYASPQTDMFYPDPRGGG
PPFEPVTYQPNVYYPPQPVSRFVRPQPSAPESNPTYLDQYPTYLQDRVVSTQYGTPTQQY
SPMNQPMYPAQYDTRRMYASAPQSYQREEMVRASPVPLEMPPNAGSPYVPEARDRYQPVE
GYYPVPTHPGQIRPPYPRETYCRLTPQLQSQPHPSLDELHRRRKEIMAQLEERKVISPPP
FAPSPTLTHPFHQEEYLDEELKVSGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVSAG
GSVEVANVDGKTLRDQRLEQQRRATDAGEDDLIPFGDRPTVSRFGAISRTSKALYQPSCP
MQAAMANQGVTAKASVSDYSLYSSHTSLGGASYTHPQTLASQGHLSERDRIAKPMPTSEK
QLRMELQQLNQQISQQTQMRGMEQQQQQQQQQQQPPPPPPAKWSSMLSNEQLSLELHQVE
REIGKRTRELSMEGHSMGVKSKPDVIKVENGQIDPQTKVLSHELPLKFSSEVPNGSSLAQ
DITMLSGKTASLTLSEDPQVGDDKTEALRTGVNSATAP
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggaccgacttcctgtcctgccctatttgcacacagacc
ttcgacgaaaccatccggaagcccatcagcttgggttgtgggcacaccgtctgcaagatg
tgcctgaacaagcttcaccgcaaggcttgtccgtttgaccagaccaccataaacacagac
attgaactgctgcctgtcaactctgccttgctgcagctggtgggagctcaggtacctgag
cagcagccaatcactctgtgcagcggggctgaagacaccaaacactatgaggaggccaga
aagtgtgtggaagagctggcactttacctgaagcccctcagtactgcgagaggtgtcggt
ctaaatagcaccacccaaagtgtgctgagccgccccatgcagaggaagctggtgactctt
gttcattgccagctggtggaagaagagggacgtattcgagcaatgcgagcagctcgttca
ctgggcgaaagaaccgtcaccgagcttatcctgcaacatcagaacccccagcaactctcc
tccaacctgtgggcagctgttcgtgcccgcggctgtcaattcctcggtccagccatgcag
gaagaagccctcaagcttgtcctcctggccctggaagacggatctgctctctcccgaaag
gtcctggttttgtttgtggtgcaaagactggaaccgcgctttcctcaagcctcgaaaact
agcattgggcatgttgtccagctgttgtacagagcctcttgctttaaggtgacaaagcgt
gatgaagattcctccctgatgcagttaaaggaggagtttcgcacttatgaagcactgcgc
cgagagcacgattctcagattgtgcagattgctatggaggctggcctgcgcatcgctcct
gatcaatggtcctctcttttgtatggggaccagtctcacaaatctcatatgcaatccata
attgacaagttgcagaccccggcctcgtttgctcagagtgtccaggaactgaccattgct
ctgcagaggactggagacccggccaatcttaacagattacgtccccatctggagctgctg
gcaaatatagatccaagccccgatgctccgcctccaacatgggagcagctagagaacggt
cttgtggctgtgaagactgttgttcatgggctggtggattacatccagaaccacagcaag
aaggggactgatcagcagcagcctccacagcatagcaagtacaagacctatatgtgcagg
gacatgaaacagcgaggaggctgcccccgaggagctagctgcacctttgctcattcccaa
gaagagttggaaaagtttagaaaaatgaacaagcgattggttcctcgacgcccactgagt
gcctctcttggtcagctgaatgaggttgggttgcccactggggccatacactcagatgag
ggtcctatggatctacctggtcggaagcaagctggccttcccaatggcatagtgtctgga
ggttctgtgacacagctcatctcccgtgggacagactccggctacgagtctgttttgaag
ccggtgaaactggatcatctgagcaacagtgccccgggctcccctccagagctccatgac
tccgtgacaaaaacttccattgcctccttacctgtcagctcacatccacctccacagcgc
atttctggtgatcttcccccattgcctgtttctaaacaaatccagatggtaccacgaggt
tcccagatttatgcttctccccagacagatatgttttatcctgacccaaggggaggaggg
cctccatttgaacctgtaacctatcagccaaatgtatattacccacctcagcccgtgtcg
cgctttgtcagacctcagccatctgcccccgagtccaaccctacctacctcgaccagtac
ccaacctatttacaagacagggttgttagcacacagtacggaaccccgacacaacaatat
tcccccatgaaccagcccatgtaccctgcacaatacgatactcgccgtatgtacgcttct
gctccccagtcttatcagagagaggaaatggttcgtgccagtcctgtaccactggaaatg
ccacccaatgctggctctccttatgtcccagaagccagagaccgttaccagcctgtagag
ggctattaccctgtcccaacgcatccaggacagataagaccaccctatccccgggaaacc
tactgccgtttgactccccaacttcaatcacagcctcaccccagcctagatgaacttcac
cgccgtcgaaaggagatcatggctcaactagaggagagaaaagtgatctctcccccacca
tttgctccttcacccaccctgacgcaccctttccatcaagaagagtaccttgacgaggaa
ctgaaagtctctgggaagtacaaagggaatgactacagccaatactcgccctggtcctgt
gacacaataggttcctacattggaaccaaagacgccaaacccaaagacgtttctgctgga
ggcagtgttgaagtagcaaatgttgatggcaaaaccttgagggatcagcgccttgagcag
caacgtagagccactgacgcaggagaggatgatctcattccatttggcgaccggcctaca
gtatctcgttttggagctatttctcgcacctccaaagccttgtaccagccatcatgcccc
atgcaggcagcaatggcaaaccaaggtgtgacggcaaaagccagcgtttctgattacagt
ctgtacagcagtcacaccagcctgggaggtgcttcatatacacaccctcaaactcttgct
tctcagggacatttgagcgagagagatcggatagcaaagcctatgcccacatctgagaag
cagctcaggatggagttacagcagctgaaccagcagatcagccagcagacccagatgaga
ggcatggagcagcaacaacaacaacagcagcaacagcagcagccacccccaccaccacca
gctaagtggtccagcatgttgtccaatgaacaactgagtcttgagctgcaccaggtggag
cgcgagatcgggaagagaacacgtgaactgagtatggagggtcactctatgggtgtgaag
agtaaaccagatgtcatcaaggttgaaaatgggcaaatagatccacagaccaaggttctg
tcgcatgaactcccactaaaattcagcagtgaggtgccaaatggatcgagcttggcccaa
gacatcaccatgctttctggaaagactgcttcactaactctttcagaagatccccaagtc
ggcgatgacaaaaccgaggccctgagaactggtgtcaactctgccactgctccataa
DBGET
integrated database retrieval system
