Nanorana parkeri (Xizang Plateau frog): 108786477
Help
Entry
108786477 CDS
T04897
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108786477 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npr03021
]
108786477 (PCF11)
03019 Messenger RNA biogenesis [BR:
npr03019
]
108786477 (PCF11)
Transcription machinery [BR:
npr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108786477 (PCF11)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108786477 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
PCF11_RFEG_rpt
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
108786477
NCBI-ProteinID:
XP_018411287
LinkDB
All DBs
Position
Unknown
AA seq
1638 aa
AA seq
DB search
MAADEPREDACREYQSSLEDLTFNSKPHINMLTILAEENLKFAKDIVTLIEAQVAKAPSS
EKLPVMYLMDSIVKNVGRDYVAAFAKNIVSTFVIVFEKVDENTRKSLYKLRSTWDEIFTS
KKLYALDVRVNQVDPAWPVKPLPPNVNTASIHVNPKFLNKPEESANTKPAVSMPKPAPPR
TSTEVPKPHLSQEQVIRQQLLVKQKQLLELQQKKLELELEQTKAQLANSVPSVPVKPNVV
PEIPHMPVKAAQPTSSMQSEKNKIPVPPHSDKAPVPTRDPRLNRASQHSSHTKDQLHKKE
IKTNAPTPADSKPLKPVSSDKTNFSSKQEKNKPGEKLPKKEPVPLDVKIKSKSPLPLLPK
IPHIRDGKPPVVDSVRDFSAREPDVNRRDPRLRKPSVHKDKSDDKPEDIKEKRKSTEKKE
EHKSSDHRPGNRNKIVNGIVPKNDTGSNDSDKLSQKPGRSSNRKRSRSRSPKSRRVRHSL
LKRRQRSQSPILPRSRSPIPPLPKNSKLRQPGSKSPHTSDFSASARDERSKRIPKLDPRD
SRRQKRPSEERQKRPSEERQQDLIMPLFSKSGSEPKENVENWQGSKTGKRWRPGWEEGKT
SQSDDHLQSNRTPYQRHRDSWSNSKGLLSPRISKQQQQPWLSVDANLKIPKELTSASKGE
LLKKANERLASGEITQDEFLVVAHQIRQLFQYQEDKQRCVYSSPTEEGNKSGVRKKPLLS
NAELTYYQHKAKLRRTQVQHNFMEQDFMDMSMDETSPGDGEEELNDRISSSLSERNEPFP
ERVLRRSPMPGTLLLEEDLPHEGHRRLEDLELPQGLRDESRTLYNERYLQRPRYDDKEQV
PFVDSTDPVSKENAKHVALVEERRPLLELPTLLPNRVDDTDSPGFEDMDVIKRESSPNKR
FDGPLGNQAGGQFFEDVKGQNMDFDPIGGNLIDSPRFDNISGQPSSLQNQPLQRFEGMQN
PMVRTPPMGSQRMEASPGPPLVSTRFDGSQGQKLGSQFDGIPGQPIVQPRFDGVQPVGPQ
RYEGGLGLGPQRFDGSQRFDGGPATQNFDGPQRFEGSQRFEGSQRFDGIGPQRFEGPQRF
DGNSGPQRPHGPRFDGPPGPRFDVNQGPRFDHGPGPQGLIRFDGPMGQAGPRFDSLPVNR
YENHPPLLARYDGVPGQPCTRFDGPPGHQTPPRFDGPVHMQPRFDAPLPRFDGPNQQPRF
DLPQGPRFENMNPPIGQNNPPFVQNAPFAEPQNVFHGQSQGIQFQRQEQRFDHPQGPGYT
GPPAPGMQLFPNQLPRPSGPYFDDKNPQVPPFGNFNLPVANMQPNPPFPSMAAMTQPGPF
NQEQMIGSAQAPNTGPFISATFANPENHLGQLDVNELFSKLLSTGILKASQSEPSSSQTE
APSQPVVEEEEEEPADEHEIPDLTSFVLEDMKIRFECVITRLYTGIQCYSCGMRFTKSQT
DVYADHLDWHYRQNRTEKDVSRKITHRRWYYGLTDWIEFEEIADLEERAKSQFFEKVHEE
VILKTQEAAKEKEFQSVQAGPAGADEICEICQEQFEQYWDEEEEEWHLRNAMRVNDKIYH
PSCYEDYKNTSSFLDSTPSPSKALLENPLSAMLSLVKEEASDTTDIAVKEEPTENRPCSR
GESIPLLAEIKSEPADPE
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggacgaaccccgtgaagacgcctgtcgggaataccagtcgtccttggaggac
ctgacgttcaacagcaagcctcacatcaacatgctgaccatcctggccgaggagaacctg
aagttcgccaaggatatcgtcactcttatcgaagcgcaagtcgctaaggcacctagctca
gagaagcttccagtcatgtatcttatggattccattgtaaaaaatgttggaagagactac
gttgctgcgtttgctaaaaacatagtttccacgtttgttattgtgtttgaaaaggtggat
gaaaacactagaaaaagtctgtataagttgcgctccacatgggatgaaatatttacttca
aagaaattgtatgcacttgatgtgagggtcaaccaggtagacccagcatggcctgtcaag
cctttaccacctaatgtgaacacagctagcatccatgtgaatcctaaattcctgaacaaa
ccagaggagtctgctaatactaaacctgctgtatccatgccaaagcctgctcctcctcgc
acaagtaccgaggtaccaaagcctcatctttcacaagagcaggttataagacaacagtta
cttgtgaagcaaaaacagttgttagaacttcagcaaaagaagttggaattagaattagag
caaacaaaggcgcaactggcaaacagtgtcccttcagtacctgtgaaaccgaacgtggtc
ccagaaattccacacatgcctgttaaggctgcacaacctacctcttctatgcagtctgag
aagaacaagattcccgtgccccctcactcagacaaggctccagtaccaaccagagaccct
agacttaacagggcaagccagcattcatcacatacaaaagatcaacttcataaaaaggaa
attaagaccaatgcacctactccagcagactctaaacccctcaaacctgtgtcgtcagac
aaaacaaacttttcatcaaagcaagaaaaaaataagccaggagagaagcttcctaaaaag
gaacctgtacctttagatgttaaaattaagtcaaaatctcctttaccattgttgcccaag
atacctcatataagagacggcaaacccccagttgtggacagtgttagagatttttctgca
agagagccggatgtaaatagaagagatccaaggttacgcaaaccgagcgtacacaaagat
aaatctgacgacaaaccggaagacataaaggagaaacgaaaaagcacagagaaaaaagag
gagcacaaatcctccgaccatcgacctggaaataggaataagattgtgaatggtattgtg
ccgaaaaacgatacgggttcaaatgactctgacaaactaagccaaaaacctggaagaagc
agtaatcgaaaaaggtctcgatcacgttctcctaagtccaggagagtccgacattctctt
ttaaagagaaggcagagaagccaatctccaattcttccgaggagccgctctcctattccc
cctctccccaaaaacagcaagctgcgtcagcctggaagtaaatcgcctcatacaagtgac
ttttcagcaagcgcaagagatgagcggagtaaaaggatacccaagttagatcctagagac
agcaggaggcagaaaagaccctctgaagaaagacagaagagaccctcagaggaaaggcag
caagatttaatcatgccgttatttagtaaatctggttcagaaccaaaggaaaatgtggag
aattggcaggggtccaagactggaaaaagatggcgacctggatgggaagaaggcaaaacg
tctcaaagtgatgatcaccttcagagtaataggactccttaccaaaggcatcgggacagc
tggtctaatagtaaaggattactttctcctcgcatttccaaacaacaacaacaaccgtgg
ttaagtgtggatgctaacttgaaaatcccaaaagaattaacaagtgcaagcaagggtgaa
ctgcttaagaaggctaatgagcgtttggcatctggtgaaattacacaagatgagttcctt
gttgtggcacatcaaattcggcagctttttcagtatcaagaagataaacaaagatgtgtg
tatagcagtcccaccgaagaagggaataaaagcggagtgcgcaagaaaccccttctgtct
aatgcagaattgacttactaccaacataaagctaagctgaggaggactcaggtacagcat
aattttatggagcaagattttatggatatgtccatggatgaaacaagccctggtgatgga
gaagaggagctcaatgacagaatatccagcagcttatctgaaagaaatgagccgttccca
gaaagagttctccgccgttcccctatgcctggaacgctacttctcgaggaagaccttccc
catgaaggtcatagaagacttgaagatctagaactgccccaaggtttgagagatgaatca
cggacattatacaatgagcgatatcttcaacgacccagatatgacgataaagagcaggtg
ccttttgtagacagtacagacccagtcagcaaagagaatgcaaagcatgttgctttagtt
gaggagagaagacctctgcttgaactgccaacgctgttacctaatagagttgatgatact
gacagtccaggttttgaagacatggatgttatcaagcgagaaagttccccaaacaaaaga
tttgatggtcctttaggtaatcaagctggaggtcaatttttcgaagacgtgaaaggacag
aatatggattttgaccctattggagggaatttaatagactctccaaggtttgacaacatt
tccgggcagccaagtagcttgcagaaccaaccattgcaaaggtttgaaggtatgcaaaat
ccaatggttaggactccaccgatgggcagtcaaagaatggaggcttccccaggtccacca
cttgtttcaacaagatttgatggttcacagggacagaagttaggatctcagtttgatgga
attcctgggcaacccatagttcaaccacgatttgatggagtgcagccagtagggccacag
agatatgaaggcggtttaggactgggaccacaaaggtttgatgggtcacagagatttgat
ggtgggcctgcaacgcaaaattttgatgggcctcaacgatttgaaggttcacagaggttt
gaaggatctcagagatttgatggaataggaccgcaaagatttgaagggccccaaaggttt
gatggtaattctgggcctcagaggccacatggtccacgattcgacggccctcctggtcct
agatttgatgtaaatcaaggtcccaggtttgatcatggccctggtccacaaggtttaata
agattcgatggacctatgggacaagctgggcccagatttgacagtcttcctgttaacaga
tacgaaaaccaccctccccttttggcaaggtacgatggtgttcctgggcaaccatgtaca
aggtttgatggacctcctgggcaccaaacgccacctaggtttgatggaccagtgcatatg
cagccacgttttgatgcacccctgccccgatttgatgggccaaatcagcagcccagattt
gatttgcctcaaggtccacgatttgaaaatatgaatccgcctattgggcagaataatcca
ccctttgtccagaatgctccttttgctgagcctcaaaatgtgtttcatggacagtcgcaa
ggcattcagttccaaaggcaagagcagagatttgaccatcctcaaggaccaggatatact
gggccaccagcccctggaatgcagctctttcctaaccaactccctagaccatcgggacct
tattttgatgacaaaaatccacaggttcctccttttgggaactttaacctgcctgttgca
aatatgcagccgaaccctccgtttccctctatggctgctatgactcaacctggacctttc
aatcaggagcaaatgattggctcagcacaagcacccaatactggcccctttatatctgcc
acattcgcaaacccagaaaatcatttgggtcagttggatgttaatgaattattttcaaag
ctgctttctaccggaatcctaaaagcttcgcagtctgagccgtcctcttcccaaactgag
gcacccagtcagcctgtcgtggaagaggaggaggaggaaccggccgacgaacatgagatt
cctgatctcaccagctttgtcctagaagatatgaaaatacgctttgagtgcgttataacc
cgcctgtacactggcatccagtgctattcatgtgggatgaggtttacaaagtcacagacc
gatgtatacgctgaccacttagattggcattaccggcaaaacaggaccgagaaagatgtg
agcaggaaaataacacacaggagatggtactacggcttaacggactggattgagtttgag
gaaattgctgatctggaggaaagggctaaaagccagttttttgagaaagtccacgaggag
gtcatattaaaaactcaggaggcggctaaggagaaagaatttcagagcgtgcaggctggt
cccgcgggagctgacgagatttgtgaaatctgccaggagcagtttgaacagtattgggat
gaggaagaggaggagtggcatctgaggaacgctatgcgtgtaaatgacaagatttatcac
ccctcctgctatgaagattataaaaatacttcttccttcttggactccacaccgtccccc
agtaaagcactcttggaaaatccattgagtgccatgttaagtctggttaaggaggaggca
tcagacactaccgacattgcagtcaaggaagagcctacagagaacagaccctgtagtagg
ggcgaaagcatacctctgttagcagagatcaagtctgagcccgccgatccggagtag
DBGET
integrated database retrieval system
