Nanorana parkeri (Xizang Plateau frog): 108787403
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Entry
108787403 CDS
T04897
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108787403 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108787403 (HBS1L)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108787403 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
DO-GTPase2
AAA_22
UBA_RAD5A
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
108787403
NCBI-ProteinID:
XP_018412450
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MARHRNVRGYNYDEDFEDDDMYGQSVEDDYGISPATAAQFIYSKRNRHSSFTGPLEEEAE
CEDEELEKSRASNIALSSVDQARLYSSLEHMREVLGESVSEQVMIDAVLKCQFDATKALD
LLFKQDCNTSAKPLSQDLPSTGIPAKGRPRELPSMEAQNEIVPKIAKMTVSGKKQTMGFY
IPSAASHVNGQSVPLSAKSQPVDDIMEEPESTVQSSTQMNTSQVSDERNATTSQVKSSGK
SKQKINVKEELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGHVNKRTMHKYEQESK
KAGKASFAYAWVLDETGEERQRGVTMDVGMTKFETKSKVITLMDAPGHKDFIPNMITGAA
QADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLTVAVNKMDQVNWQQDRFRE
VTSKLGHFLKQAGFKDSDVSYIPTSGLSGENLAKGSQISELTSWYKGLCLTDQIDSFKAP
QRSTEKPFRLCTSDVFKDQGSGFCVTGKIEAGYIQTGDRILAMPPNETCTVKGITLHDEA
VDWAAAGDHVSLTLTGMDIIKINVGYVFCSPSEPIKACTRFRARVLIFNFDVPITQGFPV
IIHYQTVSEPATIRKLISVLHKSTGEVTKKKPKCLTKGMNAIIELQTQRPVALELYKDFK
ELGRFMLRYSGSSIAAGVVTEIKE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggccaggcatcggaacgtgcgcggatacaactatgacgaggattttgaggatgatgat
atgtatgggcagtctgtagaagatgactatggtatttcaccagccacagctgctcagttc
atatattctaagcgtaacagacactcaagctttactgggcctttggaagaggaggcggag
tgtgaagatgaagaactggaaaaatcaagggcttcaaatattgctttgagttcggttgat
caagctcgtttatactcatccctggagcacatgagagaagtccttggagagtctgtttca
gagcaagttatgattgatgcggtattgaaatgtcagttcgatgccaccaaggccctcgat
cttttgttcaaacaggactgcaacacaagcgccaagcctttgagccaagacttgccctct
actgggataccagcaaaaggcagaccaagagaattgccttctatggaggcacagaatgaa
attgttcctaaaattgccaagatgactgtctctggaaagaagcaaacaatgggattttat
ataccaagtgctgcatctcatgtgaatgggcaaagtgttcctttgtctgcaaaaagccag
cctgtggatgacatcatggaggaacctgaaagcactgttcaatcatccacacaaatgaac
acatcacaggtctctgatgaacgtaatgccactacatcccaagtaaaaagttctggaaaa
tccaaacagaaaattaatgttaaagaagagctagaaaagagacaaggaggaaaacagcta
ctaaaccttgttgtaataggccatgtcgatgctggaaaaagcacactaatgggtcatcta
ctatacctcttgggacatgtgaacaaacgaaccatgcacaaatatgagcaagagtccaag
aaagcaggcaaagcttcttttgcatatgcttgggtactggatgaaacaggagaagagagg
caaagaggagtgactatggatgtaggcatgaccaaatttgaaacaaagtccaaagttatt
actttaatggatgctccggggcacaaggatttcatcccaaatatgattacaggtgctgct
caagctgacgtggccgttttggttgtagatgccagccgtggggaatttgaagcaggcttt
gaagctggtggacagacacgtgagcatgcactgctggtccgctctcttggtgtaactcaa
cttacagtagcagtcaataaaatggatcaggttaattggcaacaagatcgatttcgggaa
gttactagtaagctggggcactttctgaagcaagctggatttaaggacagtgatgtgtct
tacattccgaccagtgggctcagtggagaaaatctggccaaaggtagtcaaatatctgaa
ttgacaagctggtataaaggactgtgccttactgaccaaattgattcctttaaagcccca
cagcgttccacagagaaaccttttagactgtgtacatcagatgttttcaaagatcaaggc
tctggattttgtgtgactggtaaaatagaagctggctacatacaaacaggtgaccgaata
ctagccatgccacctaacgaaacatgcacagtaaaaggaatcacattacatgatgaagca
gtcgattgggccgcggctggagatcacgttagtctcactttgacgggcatggatatcatc
aaaatcaatgtaggatatgtgttttgcagtccaagtgaacctattaaagcctgcactcgt
ttccgagccagagttctcatctttaactttgacgtccctattacccaaggtttccctgta
atcatccactaccaaactgtaagcgagcctgccaccatcaggaagctgatcagtgtcttg
cacaagagcacaggggaggtgacgaagaaaaagccaaaatgtctaacaaaaggaatgaat
gctataatagagctccagacacagagacccgttgcattagaattatacaaagacttcaaa
gaacttgggaggttcatgttgcgttacagtgggtcatccatagctgctggcgtagtcact
gagattaaagaatga
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integrated database retrieval system
