Nanorana parkeri (Xizang Plateau frog): 108787598
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Entry
108787598 CDS
T04897
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108787598 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npr03400
]
108787598 (MSH6)
DNA repair and recombination proteins [BR:
npr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108787598 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
108787598
NCBI-ProteinID:
XP_018412697
LinkDB
All DBs
Position
Unknown
AA seq
1333 aa
AA seq
DB search
MAKQSTLFSFFAKSPTLSSSKTKSGPSSSPTEADVPSLGAKKFNSSPKESAGAPKHGGKT
PRAATPSICDFTPGDIVWAKMPGHPWWPSLVYNHPREDTHFRGKGKSLHVHVQFFDDPPT
RGWIGAKYVKNYSGSSAAEARKGGMFFSTRPEIMKAMGMADDALKTEKDKRLALAVCTEP
SDSEEEMEVEESSPASDEVSERKSNRPARQSRTNGKAKRRRITIESDSEDECSDDEFKPD
AKDSGSSDEASSGVDEEAISSAESEAEKDSPVKVPVKRKRGATSKAPPSKKSLQNDIPET
PKRTSNVSAEAKLKLSSFSAPESFDSQSTTGGAGGVTVWEHEKFEWLQDGRRKDVNRRKQ
SDENYDPSTLYVPEDFLNKCTPGMRKWWQLKSQHFDTVIFYKVGKFYELYHMDAVIGVNE
LGLTFMKGVWAHSGFPEIAFGRFSDVLVQKVYKVARVEQTETPEMMEARCKSMSHPTKFD
RVVRREICRIITKGTQTYSVLDGSPLESHNKYLLSFKEKPDDSSGQQRVYGVCFVDTSVG
KFHVGQFHDDRHCSRFRTLVAHFPPVQVLFERGNPSSDTKKVLKSGLSTAIQEGLQPTSQ
FWDGTKTLKTLAEGGYFVKEGKDDHDNGTLPPVIKSMTSDSDSLALTPGEKSELALSALG
ACIFYMKKCLIDQELLSMANFEEYVPVDIDIEKAQSSTSFFAKTSQRMVLDGVTLTNLEI
LQNGTNGSTEGTLLEKLDTCFTPFGKRLLKQWLCAPLCNPFSINDRLNALEDLMAIPEKL
TEVGELLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAVMYEETTYSKKKIADFLSALEGF
KVMREVIMVMDDAVDGFKSDILKQVMTLKDKHPKGRFPDLSSELKRWDTSFDHEKARKTG
VITPKAGFDPDYDEAQRDIKTAEQNLADYLEKQRKRLGCKSVVYWGTAKNRYQMEIPESV
TERNLPEEYELKSTKKGYKRYWTKTIEKLFGELVNAEERRDAALKDCMRRLFYNFDKNYK
EWQTAVECFAVLDVLMCFAQYSRGGDGPVCRPIVVLPDDMSPFLELRGSRHPCITKTFFG
DDFIPNDVVIGCKEEDCEEDSDAHCVLVTGPNMGGKSTLLRQAGLLVVMAQLGCYVPAEI
CRLTPVDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVLLDELGRGTATFDG
TAIASAVVKELSERIRCRTLFSTHYHSLVEDYSYTPAVRLGHMACMVENECEDPSQETIT
FLYKFIKGACPKSYGFNAARLANIPDDIIQTGHRKAREFESVMVSVKIFRKLNTLLDERT
CDVQAINELLQML
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcagagcaccctgttcagcttcttcgccaagtctccgactctttccagcagc
aagactaagagcgggccatcttcttcccccaccgaggctgacgtgccttccctgggggcg
aaaaagttcaactcctctcccaaggagtcagcgggggccccgaaacatggagggaagacc
ccccgggccgccacgcccagtatttgtgatttcacacctggtgacattgtttgggccaag
atgccaggtcatccctggtggccatcattggtttataaccacccaagggaagacactcat
ttcagaggaaagggcaagtctcttcatgttcatgtgcagttctttgatgacccaccaact
agaggatggataggtgcaaaatatgtgaagaattactcaggttcctctgctgcagaagcc
cgaaaggggggcatgttttttagtaccaggcctgaaataatgaaagcaatgggaatggca
gatgatgcattgaaaacagaaaaggataagagactggcactggctgtttgcacagaacct
tctgattctgaggaggaaatggaggttgaggaaagttctcccgcaagtgatgaagtatct
gaaagaaaatcaaacagaccagctcgtcaaagtaggactaatggaaaggccaagaggagg
agaataactattgagtctgacagtgaagacgaatgctctgatgatgagttcaagcctgat
gcaaaggattctgggagcagtgatgaggcaagcagtggtgtagatgaggaggcgatctct
tcagcagagagcgaagcggagaaagacagtccagtaaaggttcctgtgaaacgcaagcga
ggtgctacatccaaggctccaccttctaaaaagagtttgcaaaatgacattccagaaacg
ccaaagagaaccagcaatgtatctgcagaggccaaattaaagctgtcgtctttctctgcc
ccagaatcttttgactctcagtccactacaggtggggctggaggcgtcactgtttgggaa
catgaaaagtttgaatggctgcaggatgggcggagaaaagatgtcaatcgcagaaaacag
agtgatgaaaattatgacccttcaacactgtatgttccagaggacttcctaaataaatgt
acaccaggaatgaggaaatggtggcagctcaaatctcaacattttgacacggtcatattt
tacaaggttgggaagttctatgaactgtaccacatggatgctgttattggtgtcaatgaa
ttgggtctgacattcatgaaaggagtttgggctcactctggttttcctgagattgctttt
ggacgtttctctgatgtgcttgtacagaaagtatacaaagtagccagggtggaacagaca
gaaaccccagagatgatggaagcacgttgcaagtctatgtctcatccaaccaaatttgat
cgggtggtgcggcgggaaatatgcagaataattacgaaagggacccagacctacagtgtt
ctggatggcagccccttggaaagccataataaatatcttttgagctttaaggaaaagccg
gatgattcctctggacagcagagagtatatggtgtgtgctttgtggacacatctgtggga
aaatttcacgttggtcagtttcatgatgaccgccattgttcacggttcaggactttagta
gcccactttcctccagttcaggtactgtttgaaaggggcaatccttcatctgatacaaag
aaggttcttaaaagcggtttgtccactgcaattcaagagggtttgcagcctacctctcaa
ttttgggatggcacaaaaacactaaagacccttgctgaaggaggttactttgtgaaagaa
ggcaaagatgaccatgataatggcactttaccccctgttattaagagcatgacgtcagac
agcgactcgctggcccttacccctggagaaaagagcgagctggctctttctgctcttggg
gcatgtattttttacatgaaaaaatgtctcatcgatcaggagctcctctctatggccaac
tttgaagagtatgttcctgttgacattgacattgaaaaagcccaaagctcaaccagtttc
tttgcaaaaaccagtcagcgaatggttcttgatggggtgactcttacaaatctagaaatc
ttacagaatgggacaaatgggtctactgaaggtacactactggaaaaactagacacatgc
tttactccttttggaaagcgcctcttaaaacaatggctttgtgcaccgctgtgcaatcct
ttttccattaacgatcgtctcaatgcattggaagatcttatggctatcccagaaaaactg
actgaagtgggagagcttctgaaaaaacttcccgacctggaaaggcttctcagcaaaatt
cacagtatcggctcaccactgaagagccaaaaccatccggacagcagagccgtaatgtat
gaggagactacgtacagtaaaaagaagattgcagatttcctttctgcgctggaaggtttt
aaggtgatgcgtgaagtcatcatggttatggacgatgccgttgatgggtttaagtcggat
atactcaagcaggttatgactctgaaagataaacatcctaaaggtcgattcccagacttg
tcatctgaactgaagaggtgggacacttcattcgatcacgagaaagctagaaaaaccgga
gtgattacccccaaagcaggctttgaccccgactatgatgaagcacagagagatatcaag
actgcagagcagaatctagcggactatctggagaagcaacgcaagcggcttggatgtaag
agtgtcgtttattggggaacggcaaagaatcgctaccaaatggaaataccagagagtgta
accgagcgtaatttgccagaggagtatgagctgaagtctacaaagaagggctacaagcgt
tactggacaaagaccattgagaagctctttggggagcttgtaaatgctgaagagcgcaga
gacgcagcacttaaagactgcatgagaaggttgttttataactttgataaaaactacaaa
gagtggcagacggctgtagagtgctttgccgtacttgatgtcctcatgtgttttgctcag
tacagccgcggtggtgatggaccagtttgtaggcctatcgtagttttgcccgatgacatg
tcacctttcttggagcttcgaggatctcgtcacccttgtattacaaaaaccttttttgga
gacgactttattccaaatgacgttgtgattggttgtaaggaagaggattgtgaagaggac
agtgacgcccactgtgtacttgtgacgggtccaaacatgggtgggaaatccactctgcta
agacaagctggtcttctggtggttatggcacagctgggatgttatgtacctgctgagatt
tgtagattgactccagtggaccgagtgtttaccagactgggagcgtcagacagaatcatg
gcaggtgaaagcacattttttgtggagttgagtgaaacctccagtatacttcagcatgca
acagaacattcccttgtgcttctggatgagctcggtcgtggcacggctacatttgatggg
acagctatagccagtgctgtcgtaaaggaactctcggaaaggatcagatgccgcacattg
ttctccacacactaccactccctggtggaggattactcctacacaccggcagtacggctt
ggccatatggcctgtatggttgaaaatgaatgtgaggatccaagccaggagaccattaca
ttcctatacaagtttatcaaaggggcgtgtccaaaaagctatggattcaatgcagcaaga
ctggctaacatacctgatgatatcattcagactggacacagaaaagcaagggagtttgaa
agtgtcatggtgtctgtgaagatattcaggaagttgaacacattgctggatgaacggact
tgtgatgtccaagccatcaatgaactactccaaatgctctaa
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