Nanorana parkeri (Xizang Plateau frog): 108788810
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Entry
108788810 CDS
T04897
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr04382
Cornified envelope formation
npr04510
Focal adhesion
npr04512
ECM-receptor interaction
npr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108788810 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108788810 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108788810 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108788810 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npr04147
]
108788810 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
npr00536
]
108788810 (COL4A6)
Exosome [BR:
npr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108788810 (COL4A6)
Glycosaminoglycan binding proteins [BR:
npr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108788810 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108788810
NCBI-ProteinID:
XP_018414164
LinkDB
All DBs
Position
Unknown
AA seq
1701 aa
AA seq
DB search
MITRLSLLVLAACFAADLVQAGGKKNYQGPCAGRDCSGGCKCFPEKGARGRPGQLGAQGP
MGPPGFSGPSGVAGPKGERGTQGLPGPSGSKGDQGPMGVPGFQGANGVPGYSGQPGHRGL
PGLDGCNGTTGDDGFPGSSGFSGPAGSSGIPGPKGQKGEPSYIQGGIKGPKGDDGTNGAD
GFPGPRGPAGSSGLTGPAGLPGLPGPPGPPGFIGPKGNMGVGYQGEKGEKGDTGGQGDPG
PPASSGMEFSTFLKGIPGELGDSGDPGYPGTPGMPGPAGFNGKGEKGEKGIPGLPGVRGF
PGTDGFNGFPGDKGNTGPPGLIGLDGFKGVKGEQGDIGFPGAPVYINNGGSAFPGLPGDP
GVPGFQGMPGDDGFTGTPGFPGPPGFPAFGRGRPGPSGFPGIQGYKGDIGDPGRAAYGPQ
GIQGNLGPQGPPGFRGPPGPPGPGRQIGGEPGKPGEKGTQGPPGRFGDKGLKGDDGDCAC
GGIDNARGRIGPPGPPGPPGSNGFPGFTGPSGDPGRRGSVGPSGPPGSPGTAGVPGLKGE
KGEPVYPSGRGVRGDPGAVGLRGAPGLSGKAGRDGLPGLPGRKGFPGEGGAGNPGEKGFP
GPLGQKGRRGESGLPGIGFPGLPGSRGLPGDPGLPGQDGRLGDPGPPGDCCCGDNVGNGD
LVTEGGQTLPCIIAGEPGDPGMPGDPGPVGPRGEKGFPGIPGLRGFDGGSGQPGSPGLGG
FPGPQGFTGPRGDEGPSGFPGLDGIDGPPGKFGLPGLPGFKGARGEVLGAEPGAAGEPGR
PGFIGDKGVRGDSGFDGQKGLDGRPGLMGAKGERGNSGFPGGPGPRGLPGFGGEAGIKGK
QGPMGDIGLPGSSGCQGFPGAKGIPGNRGSPGPAGMKGSPGPNGDAGRPGDLGPSGPPGP
SARDGLPGFPGAKGDKGSLGLIGFPGMPGRPGRPGSSGFKGYDGLPGRNGAPGLEGQKGE
KGSAGDPGPRGPASIVNENMLLGEPGEPGRNGQPGFPGPRGDKGFPGLPGSPGLPGFSGT
PGRDKGQGGDPGLPGAFGRPGPPGIKGSLGIIGFPGMPGMNGADGLPGSPGFAGAPGRPG
EKGDRGESLGQPGAPGLKGERGLPGNPGGRGFDGLPGDVGPYGRPGSPGVKGLPGEFGRP
GQPGSPGLQGFRGNPGFVGTPGLPGPQGFPGPAGAPGLKGFPGFSGLDGLNGLPGTRGLP
GTPGLSEAGRPGTPGFPGPKGEKGSPNTVPGQPGFNGSKGNRGDPGLTGVPGTSGPPGPP
GITDTLPGFPGDPGPPGLDGEMGLPGRAGPRGPPGPASNQGDTGDPGLPGSPGRASMKGD
AGFPGNPGSPGAPGMKGLRGDPGFIGSPGKEGAFGDPGYPGLKGEKGNQGFQGPTGRPGP
PPLDIDSSLAIPGLPGINGFDGAPGERGLQGGAGTPGSKGFPGRPGQMGRNGTPGQPGFI
GDAGDPGIPGTSGFEGSPGKQGSAGLPGMPGRSVGVGYTLVKHSQAETIPQCPVGMNRLW
DGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTMPFVYCNINEVCYYASRNDKSYWLSTSAP
IPMMPVSSTQIKNYISRCSVCEASSQAVAVHSQDNSIPQCPNGWRSLWIGYSFLMHTAAG
AEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVDETRQFAGAPPSE
TLKAGQLRTRVSRCQVCMKNL
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atgatcactcgactttccctgctggttcttgctgcctgctttgctgcggacctggtacaa
gcgggagggaagaagaactatcaggggccatgtgcaggacgagattgcagcgggggctgc
aaatgctttccagaaaaaggagcccggggtcgtccaggtcagcttggagctcagggtcca
atggggcccccaggtttctcagggccaagcggagttgctggaccaaagggtgaaagagga
actcaaggcttaccaggaccatctgggtcaaaaggcgaccagggccctatgggagttcca
gggttccaaggtgccaatggagtacctggttatagtggacagccaggtcacagaggcttg
cctggactggatggttgtaatggtaccactggagatgacggttttcctgggtcttctggt
ttttctgggccagctggatcatcaggtattccaggtcccaaaggccagaagggtgaacca
tcctatatacaaggtggaattaaaggacctaagggagatgatggaacaaatggcgctgat
gggtttcctggaccacgtggcccagctggatcctctggactgacagggccagctggtcta
ccaggcttaccaggtccacctggtccacctggatttattggaccaaagggtaatatggga
gttggttatcaaggagagaaaggagagaagggagacactggcggtcagggtgacccagga
cctccagcatctagtggaatggaattctcaacctttcttaaaggaatcccaggagaactg
ggagacagtggtgatcctggatatcctggaacacctggaatgcctgggccagctgggttt
aatggaaaaggagagaaaggggagaaaggtattcctggtcttccgggtgtaaggggcttt
ccgggaacagatggatttaatggatttcctggagataaggggaatactggacctcctggg
ctcattgggcttgatggtttcaaaggcgttaagggtgaacagggtgacataggttttcct
ggggcacccgtgtatataaataacggtggatcagcatttccaggtttaccaggagatcca
ggtgttcctgggtttcaaggtatgccaggagatgatggattcactggtactcccggcttt
cctggacccccggggtttccagcatttggaagaggtcgacctggtccttccggctttcca
ggtattcaaggatacaaaggggatataggagatccaggtagagcagcttatggtccacaa
ggaatccaaggaaaccttggaccacaagggccacctggatttcgaggacctccaggacca
cctggaccaggacgacagattggtggtgaacctggaaaaccaggagagaagggaacgcaa
ggtcctccagggagatttggagacaaaggattgaaaggtgatgatggtgactgtgcttgt
ggtggcatagataatgcacgtggtaggatcggaccacctggacctccaggtccacccgga
agtaatggttttccaggatttacgggacctagtggagacccaggaaggagaggatcagtg
ggtccatctggacctcctgggtctccaggcactgctggtgttccaggacttaaaggagag
aaaggagaaccagtttacccatccggtcgtggagttcgtggagatcctggagctgtagga
cttagaggagcccctggactttcaggaaaggcaggaagagatgggctcccggggttgcca
ggtcgtaaaggatttcctggagaaggtggagctggtaatcctggtgagaagggatttcca
gggcccctgggccaaaaaggtcgccgtggagaaagtggacttcctggtattggctttcct
ggtttacctggctctcgtggtctgcctggtgatcctgggctcccaggacaagatgggcga
ctaggtgatccaggaccacctggtgactgctgctgcggggacaatgttggtaatggagac
ttagtcacagagggagggcaaactttaccatgcataattgctggggaaccaggtgaccca
ggaatgcccggtgaccctggacctgtaggacctagaggtgaaaaaggattccctggaatc
ccagggctccgtggctttgatggcggtagcggacaaccgggcagtccaggtcttggtgga
tttccaggaccacaaggctttacaggtccccgtggagatgaaggcccttctggatttcct
ggcctggatggcattgatggacctccaggcaagttcggacttcctggtttgcctggtttc
aaaggagcacgtggtgaagtattaggggcggagcctggtgctgctggtgaacctggaaga
cctggattcataggagataaaggagttcgtggagactctggattcgatgggcaaaaaggc
ttagatggacgacctggattgatgggagctaaaggtgaaaggggtaattcaggatttcca
ggtggaccaggtcccagaggtctgccaggatttggaggagaagctggcattaaggggaaa
caaggaccaatgggagatattggactcccagggtcatcaggctgccaaggctttcctgga
gcaaagggtatacctggaaacagaggttccccaggtccagctggtatgaaaggtagtcca
ggtcctaatggagatgcaggtcgtcctggtgatttaggaccatctggacccccaggacca
agtgctcgagatggactgccaggctttccaggagctaaaggtgataaaggatctctcggt
ctgatcggctttcctggtatgcctggacgtccgggccgtcctggtagcagcggatttaaa
ggatatgatggattacctggaagaaatggtgctccaggacttgaaggtcaaaagggggag
aaaggcagcgcgggtgaccctggcccacgaggtccagcatcgattgtaaatgagaacatg
cttttaggagaacctggagaacctggaagaaacggacaaccagggttccctggcccccga
ggtgataaaggtttccctggtctacctgggtcacctggcctccctggattctcaggaaca
ccaggaagagataaaggtcaaggtggagatcctgggcttcctggagcatttggaaggccg
ggtcctcctggtattaaaggctcactagggatcataggatttccagggatgccaggaatg
aatggtgcagatggattaccaggtagccctggttttgctggtgcgcctggacgacctggt
gaaaaaggtgaccgcggggaatctttagggcagcctggtgctccgggacttaagggagaa
cgtggattaccaggaaatccaggtggaagaggctttgatggactcccaggagatgttgga
ccatatggaagacctggaagcccaggagtaaaaggcttgcctggagagtttggccgtcca
ggacaaccaggatctcctggccttcagggatttcggggaaaccctgggtttgttggaacc
cctggattacctggacctcagggattccctggacctgcaggagccccaggtcttaaagga
tttcctggtttttctgggctggatggattaaatggcttgcctggcacaagaggattaccc
ggcacacctggtttaagtgaagctggacggccgggaactcctggatttccaggtcctaaa
ggtgaaaaaggatctcccaacacagtccctggacaacctggatttaatggttctaaaggc
aatcgtggagatccaggtcttactggtgttcctggaacttctggaccacctgggccacca
ggaataacagatactttacctggattccccggagaccctggaccgcctggactagatgga
gagatgggattgccaggacgtgctggaccacgtggtccccctggtccagcctccaatcaa
ggagacacaggagatcctggattaccaggatcacctggcagagccagtatgaaaggagat
gcaggtttccctggaaatcctggcagccctggagctcctggtatgaaaggtctaagaggt
gatccaggattcattgggagtcctggaaaagagggtgcttttggagatcccggatatcct
ggactcaagggagaaaaggggaaccaaggttttcaaggtccaacggggcgcccaggtcca
cctcccttagatatagattcttctcttgcaattcctggtcttcctggtatcaatggcttt
gatggtgcgccaggtgaaagaggtctacagggaggagcaggaactcccggcagcaaaggt
tttcctggccgtccagggcagatgggaaggaatggaacaccaggtcagcctgggtttatt
ggtgatgctggtgacccaggtattccagggacctcaggatttgaaggttctccaggaaaa
cagggctccgctggactacctggtatgcctggaaggagtgtaggtgttggctataccttg
gtgaaacacagccaggctgaaacaattcctcagtgtccagtcggaatgaacagactttgg
gatggctacagtttgctctatgtagaaggacaggaaaaggctcacaaccaagaccttggt
cttgctggatcttgcctgccccgatttagcacaatgccttttgtctactgtaatatcaac
gaggtctgctattatgccagccgaaatgacaagtcttactggctgtccaccagtgctcct
attcctatgatgcctgtgtccagcacccagattaaaaactacatcagccgctgctctgtg
tgtgaagcttcttctcaggctgttgctgttcacagccaagacaacagcatcccacaatgt
cctaatggctggaggagcctgtggataggatactctttccttatgcacacagctgcgggt
gcagaaggtggcggccagtccttagtgtcccctggctcatgtctggaagacttccgggcc
actccattcatcgaatgcaatggcgctcgaggaacctgccattactttgccaacaagtac
agtttttggctcactactgtggatgaaacaaggcagtttgctggggcgcccccctccgag
acactaaaagctgggcaacttcgaacacgtgtcagccgctgtcaggtgtgcatgaagaac
ttgtag
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integrated database retrieval system
