Nanorana parkeri (Xizang Plateau frog): 108788810
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Entry
108788810 CDS
T04897
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr04510
Focal adhesion
npr04512
ECM-receptor interaction
npr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108788810 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108788810 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108788810 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npr04147
]
108788810 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
npr00536
]
108788810 (COL4A6)
Exosome [BR:
npr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108788810 (COL4A6)
Glycosaminoglycan binding proteins [BR:
npr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108788810 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108788810
NCBI-ProteinID:
XP_018414164
LinkDB
All DBs
Position
Unknown
AA seq
1701 aa
AA seq
DB search
MITRLSLLVLAACFAADLVQAGGKKNYQGPCAGRDCSGGCKCFPEKGARGRPGQLGAQGP
MGPPGFSGPSGVAGPKGERGTQGLPGPSGSKGDQGPMGVPGFQGANGVPGYSGQPGHRGL
PGLDGCNGTTGDDGFPGSSGFSGPAGSSGIPGPKGQKGEPSYIQGGIKGPKGDDGTNGAD
GFPGPRGPAGSSGLTGPAGLPGLPGPPGPPGFIGPKGNMGVGYQGEKGEKGDTGGQGDPG
PPASSGMEFSTFLKGIPGELGDSGDPGYPGTPGMPGPAGFNGKGEKGEKGIPGLPGVRGF
PGTDGFNGFPGDKGNTGPPGLIGLDGFKGVKGEQGDIGFPGAPVYINNGGSAFPGLPGDP
GVPGFQGMPGDDGFTGTPGFPGPPGFPAFGRGRPGPSGFPGIQGYKGDIGDPGRAAYGPQ
GIQGNLGPQGPPGFRGPPGPPGPGRQIGGEPGKPGEKGTQGPPGRFGDKGLKGDDGDCAC
GGIDNARGRIGPPGPPGPPGSNGFPGFTGPSGDPGRRGSVGPSGPPGSPGTAGVPGLKGE
KGEPVYPSGRGVRGDPGAVGLRGAPGLSGKAGRDGLPGLPGRKGFPGEGGAGNPGEKGFP
GPLGQKGRRGESGLPGIGFPGLPGSRGLPGDPGLPGQDGRLGDPGPPGDCCCGDNVGNGD
LVTEGGQTLPCIIAGEPGDPGMPGDPGPVGPRGEKGFPGIPGLRGFDGGSGQPGSPGLGG
FPGPQGFTGPRGDEGPSGFPGLDGIDGPPGKFGLPGLPGFKGARGEVLGAEPGAAGEPGR
PGFIGDKGVRGDSGFDGQKGLDGRPGLMGAKGERGNSGFPGGPGPRGLPGFGGEAGIKGK
QGPMGDIGLPGSSGCQGFPGAKGIPGNRGSPGPAGMKGSPGPNGDAGRPGDLGPSGPPGP
SARDGLPGFPGAKGDKGSLGLIGFPGMPGRPGRPGSSGFKGYDGLPGRNGAPGLEGQKGE
KGSAGDPGPRGPASIVNENMLLGEPGEPGRNGQPGFPGPRGDKGFPGLPGSPGLPGFSGT
PGRDKGQGGDPGLPGAFGRPGPPGIKGSLGIIGFPGMPGMNGADGLPGSPGFAGAPGRPG
EKGDRGESLGQPGAPGLKGERGLPGNPGGRGFDGLPGDVGPYGRPGSPGVKGLPGEFGRP
GQPGSPGLQGFRGNPGFVGTPGLPGPQGFPGPAGAPGLKGFPGFSGLDGLNGLPGTRGLP
GTPGLSEAGRPGTPGFPGPKGEKGSPNTVPGQPGFNGSKGNRGDPGLTGVPGTSGPPGPP
GITDTLPGFPGDPGPPGLDGEMGLPGRAGPRGPPGPASNQGDTGDPGLPGSPGRASMKGD
AGFPGNPGSPGAPGMKGLRGDPGFIGSPGKEGAFGDPGYPGLKGEKGNQGFQGPTGRPGP
PPLDIDSSLAIPGLPGINGFDGAPGERGLQGGAGTPGSKGFPGRPGQMGRNGTPGQPGFI
GDAGDPGIPGTSGFEGSPGKQGSAGLPGMPGRSVGVGYTLVKHSQAETIPQCPVGMNRLW
DGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTMPFVYCNINEVCYYASRNDKSYWLSTSAP
IPMMPVSSTQIKNYISRCSVCEASSQAVAVHSQDNSIPQCPNGWRSLWIGYSFLMHTAAG
AEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVDETRQFAGAPPSE
TLKAGQLRTRVSRCQVCMKNL
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atgatcactcgactttccctgctggttcttgctgcctgctttgctgcggacctggtacaa
gcgggagggaagaagaactatcaggggccatgtgcaggacgagattgcagcgggggctgc
aaatgctttccagaaaaaggagcccggggtcgtccaggtcagcttggagctcagggtcca
atggggcccccaggtttctcagggccaagcggagttgctggaccaaagggtgaaagagga
actcaaggcttaccaggaccatctgggtcaaaaggcgaccagggccctatgggagttcca
gggttccaaggtgccaatggagtacctggttatagtggacagccaggtcacagaggcttg
cctggactggatggttgtaatggtaccactggagatgacggttttcctgggtcttctggt
ttttctgggccagctggatcatcaggtattccaggtcccaaaggccagaagggtgaacca
tcctatatacaaggtggaattaaaggacctaagggagatgatggaacaaatggcgctgat
gggtttcctggaccacgtggcccagctggatcctctggactgacagggccagctggtcta
ccaggcttaccaggtccacctggtccacctggatttattggaccaaagggtaatatggga
gttggttatcaaggagagaaaggagagaagggagacactggcggtcagggtgacccagga
cctccagcatctagtggaatggaattctcaacctttcttaaaggaatcccaggagaactg
ggagacagtggtgatcctggatatcctggaacacctggaatgcctgggccagctgggttt
aatggaaaaggagagaaaggggagaaaggtattcctggtcttccgggtgtaaggggcttt
ccgggaacagatggatttaatggatttcctggagataaggggaatactggacctcctggg
ctcattgggcttgatggtttcaaaggcgttaagggtgaacagggtgacataggttttcct
ggggcacccgtgtatataaataacggtggatcagcatttccaggtttaccaggagatcca
ggtgttcctgggtttcaaggtatgccaggagatgatggattcactggtactcccggcttt
cctggacccccggggtttccagcatttggaagaggtcgacctggtccttccggctttcca
ggtattcaaggatacaaaggggatataggagatccaggtagagcagcttatggtccacaa
ggaatccaaggaaaccttggaccacaagggccacctggatttcgaggacctccaggacca
cctggaccaggacgacagattggtggtgaacctggaaaaccaggagagaagggaacgcaa
ggtcctccagggagatttggagacaaaggattgaaaggtgatgatggtgactgtgcttgt
ggtggcatagataatgcacgtggtaggatcggaccacctggacctccaggtccacccgga
agtaatggttttccaggatttacgggacctagtggagacccaggaaggagaggatcagtg
ggtccatctggacctcctgggtctccaggcactgctggtgttccaggacttaaaggagag
aaaggagaaccagtttacccatccggtcgtggagttcgtggagatcctggagctgtagga
cttagaggagcccctggactttcaggaaaggcaggaagagatgggctcccggggttgcca
ggtcgtaaaggatttcctggagaaggtggagctggtaatcctggtgagaagggatttcca
gggcccctgggccaaaaaggtcgccgtggagaaagtggacttcctggtattggctttcct
ggtttacctggctctcgtggtctgcctggtgatcctgggctcccaggacaagatgggcga
ctaggtgatccaggaccacctggtgactgctgctgcggggacaatgttggtaatggagac
ttagtcacagagggagggcaaactttaccatgcataattgctggggaaccaggtgaccca
ggaatgcccggtgaccctggacctgtaggacctagaggtgaaaaaggattccctggaatc
ccagggctccgtggctttgatggcggtagcggacaaccgggcagtccaggtcttggtgga
tttccaggaccacaaggctttacaggtccccgtggagatgaaggcccttctggatttcct
ggcctggatggcattgatggacctccaggcaagttcggacttcctggtttgcctggtttc
aaaggagcacgtggtgaagtattaggggcggagcctggtgctgctggtgaacctggaaga
cctggattcataggagataaaggagttcgtggagactctggattcgatgggcaaaaaggc
ttagatggacgacctggattgatgggagctaaaggtgaaaggggtaattcaggatttcca
ggtggaccaggtcccagaggtctgccaggatttggaggagaagctggcattaaggggaaa
caaggaccaatgggagatattggactcccagggtcatcaggctgccaaggctttcctgga
gcaaagggtatacctggaaacagaggttccccaggtccagctggtatgaaaggtagtcca
ggtcctaatggagatgcaggtcgtcctggtgatttaggaccatctggacccccaggacca
agtgctcgagatggactgccaggctttccaggagctaaaggtgataaaggatctctcggt
ctgatcggctttcctggtatgcctggacgtccgggccgtcctggtagcagcggatttaaa
ggatatgatggattacctggaagaaatggtgctccaggacttgaaggtcaaaagggggag
aaaggcagcgcgggtgaccctggcccacgaggtccagcatcgattgtaaatgagaacatg
cttttaggagaacctggagaacctggaagaaacggacaaccagggttccctggcccccga
ggtgataaaggtttccctggtctacctgggtcacctggcctccctggattctcaggaaca
ccaggaagagataaaggtcaaggtggagatcctgggcttcctggagcatttggaaggccg
ggtcctcctggtattaaaggctcactagggatcataggatttccagggatgccaggaatg
aatggtgcagatggattaccaggtagccctggttttgctggtgcgcctggacgacctggt
gaaaaaggtgaccgcggggaatctttagggcagcctggtgctccgggacttaagggagaa
cgtggattaccaggaaatccaggtggaagaggctttgatggactcccaggagatgttgga
ccatatggaagacctggaagcccaggagtaaaaggcttgcctggagagtttggccgtcca
ggacaaccaggatctcctggccttcagggatttcggggaaaccctgggtttgttggaacc
cctggattacctggacctcagggattccctggacctgcaggagccccaggtcttaaagga
tttcctggtttttctgggctggatggattaaatggcttgcctggcacaagaggattaccc
ggcacacctggtttaagtgaagctggacggccgggaactcctggatttccaggtcctaaa
ggtgaaaaaggatctcccaacacagtccctggacaacctggatttaatggttctaaaggc
aatcgtggagatccaggtcttactggtgttcctggaacttctggaccacctgggccacca
ggaataacagatactttacctggattccccggagaccctggaccgcctggactagatgga
gagatgggattgccaggacgtgctggaccacgtggtccccctggtccagcctccaatcaa
ggagacacaggagatcctggattaccaggatcacctggcagagccagtatgaaaggagat
gcaggtttccctggaaatcctggcagccctggagctcctggtatgaaaggtctaagaggt
gatccaggattcattgggagtcctggaaaagagggtgcttttggagatcccggatatcct
ggactcaagggagaaaaggggaaccaaggttttcaaggtccaacggggcgcccaggtcca
cctcccttagatatagattcttctcttgcaattcctggtcttcctggtatcaatggcttt
gatggtgcgccaggtgaaagaggtctacagggaggagcaggaactcccggcagcaaaggt
tttcctggccgtccagggcagatgggaaggaatggaacaccaggtcagcctgggtttatt
ggtgatgctggtgacccaggtattccagggacctcaggatttgaaggttctccaggaaaa
cagggctccgctggactacctggtatgcctggaaggagtgtaggtgttggctataccttg
gtgaaacacagccaggctgaaacaattcctcagtgtccagtcggaatgaacagactttgg
gatggctacagtttgctctatgtagaaggacaggaaaaggctcacaaccaagaccttggt
cttgctggatcttgcctgccccgatttagcacaatgccttttgtctactgtaatatcaac
gaggtctgctattatgccagccgaaatgacaagtcttactggctgtccaccagtgctcct
attcctatgatgcctgtgtccagcacccagattaaaaactacatcagccgctgctctgtg
tgtgaagcttcttctcaggctgttgctgttcacagccaagacaacagcatcccacaatgt
cctaatggctggaggagcctgtggataggatactctttccttatgcacacagctgcgggt
gcagaaggtggcggccagtccttagtgtcccctggctcatgtctggaagacttccgggcc
actccattcatcgaatgcaatggcgctcgaggaacctgccattactttgccaacaagtac
agtttttggctcactactgtggatgaaacaaggcagtttgctggggcgcccccctccgag
acactaaaagctgggcaacttcgaacacgtgtcagccgctgtcaggtgtgcatgaagaac
ttgtag
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integrated database retrieval system
