Nanorana parkeri (Xizang Plateau frog): 108789082
Help
Entry
108789082 CDS
T04897
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108789082 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108789082 (EDC4)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108789082 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
108789082 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
Beta-prop_EDC4L
WD40
WD40_WDHD1_1st
Beta-prop_HPS5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
EIF3I
KH_BICC1
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
108789082
NCBI-ProteinID:
XP_018414513
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MSGEWRNYGNQRQQLEIQRLSVKIQPVAKYDWEQKYYYGSLIAVSNAYLAYATRGSNGSA
MIRVLSVTTADRILLKGITGSVTDLAFAHLNSNQLACLDEAGNLFVWRLKMEGGKIQDEI
VVHIQRSDQALLNTHRRIIWCPYIPEENEEMPAEDASQTVALLHEDRAEVWDLEIVQANY
TSWPTDISDIKEGFIVVKGHSGRLSEGALSPDGTVLATASHDGFVKFWQIYIEGLDQPRC
LHEWQPHTGRPVSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTVCF
SPDPFSSNVLPGLKVSLDLSAEFLILTDVQRKVLYVMELQQNQDEGRAAFTSISEFLLTH
PVLSFGIQDVCRHVRHSEVLPSEAENDNAGAEEALESDEGDDATIVLIKLFCVHTKALQD
VQIRFKPHQNLESAVLCVKGTHEDFVIPAEMTDIKPEKRPLSQPLHGSQSDILRNATDLL
LLSNDSKPKLMTPDAFMTPSSQTQQIASSAGSSISSLTSITAMSSASVDTTVSRLPDEIT
QSPKLQLDNNIALSTSLHSGSFPSPPRTTAVLIPGLSEKVIHKPIVQVTPSSIPLELQSL
EPSMAPQASPTRERSPDVISSASTAVSQDIPEIASETLQRSYPAPISLGLTLEDTDTNHA
PSMSSAASALQLLSARNCNIPEHGHRPLEPGLSGAPDELVGAETLTERSIHKDKVDEVIS
QPWPAAPDITRETRNNLSESDHDDEVASLVTAINSFGGKGQSPRLLVKEWKTSVSPNSSP
KGKRKKEEDGGTTNHSRQLKSTTSFEQHEELMALLYSQQRELSELRQNQQDLMQRLTDHL
DATQSSIMGHVERVIDTQQAQEQRRLDRILSDGQQRTGQLQEYLSQQLSHSLSGSLTNRL
DKTIREEIKKTVPLCINKTLEPVTGQLSSTIAAKFTSVEGTVKDSVIKIVKSKNITDAVG
RAIADSLQIPIQTAYREAFQSIVLPAFEKGCQSMFQQINGSFRQGTQEYMQQLETHLKNR
KIHDQETREPLLTQLHQLIESLQTTTDQLSSNLTSGMRSEVQHQLHVAVGNMQDSILNHV
QRIIKEEVNLAMKEQQAAVTSSIMHVMRSAAGTPIPSSHFDFHSQQTHILQLLQQGNLNQ
AFQQALTASDLNLILYVCETVDSQQVFGQHPCPLTQPVLLSLIQQLSFDLGTRTELKLNY
LEEAVMHLDHSDPVTRDHMGSVMTQVRQKLFQFLQVEPHNPLQKPARRLMIMLQGLVTPN
MS
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagaatggcgcaactacggcaatcagagacaacagctagagatacagcgcctt
tccgttaaaatacagcctgtagcaaaatatgactgggaacagaagtactactatggcagt
ctcatagcagtatctaatgcttatcttgcatatgccactagaggttctaatgggtcagct
atgattcgtgtcctaagtgtcaccacagcagatcgaatattgctaaaaggtattacagga
agtgttacagacttggcatttgcccacctgaactcgaaccagctagcttgtctggatgaa
gcaggaaacctttttgtatggcgacttaaaatggaaggtggaaagatacaagatgaaatt
gttgttcacatacagaggtcagatcaggcactgttaaatactcaccgtagaattatttgg
tgcccctacattcctgaagaaaacgaagagatgccagcagaggatgccagtcagactgtt
gctttgttgcatgaggatagggctgaggtatgggacctggagattgtacaagcaaactat
acctcatggccgacggatatcagtgatatcaaggaaggatttatagttgtgaaaggacat
tctgggcgcctaagtgaaggtgctctttctcctgatggaacagtcttggccacagctagc
cacgatggctttgtgaagttttggcagatatatattgagggactagatcaaccaagatgt
ctccatgagtggcaacctcacactggaagacctgtgtcttgcttgctgttctgtgacaac
cacaagaaacaagacccagaagtgccgttttggaggtttttaatcacaggagctgatcag
aacagagagctcaagatgtggtgcactgtttcatggacttgtcttcagactgtatgtttt
tctccagacccgtttagctccaatgttttgcctgggttaaaagtatctttggatttgtct
gcagaattcctgattctcactgatgttcagagaaaagttttgtatgtgatggagttacag
cagaatcaggatgagggaagggctgctttcacttcaatttctgaatttttgctgactcac
ccagttttgagttttggaattcaagatgtatgtcgtcatgtaagacattcagaagttctc
ccatcagaggcagaaaatgataatgctggtgcagaagaggcactggaatctgatgaaggg
gatgatgccaccattgtacttataaaactattttgtgttcacacaaaggcattgcaggat
gtacagatcaggttcaaaccgcaccagaacctggagtctgctgtactttgtgtaaaaggc
acacatgaagattttgttattcctgctgaaatgacagacatcaaaccagagaagaggcca
cttagccagcccttacatggatcacaaagtgatattcttagaaatgcaactgatctcctt
ttgctttcaaatgactctaagccaaagcttatgactcctgatgcattcatgacacccagt
tcccaaactcaacagattgcctcttctgccggatccagtattagctcactcacttccatt
acagctatgagcagtgcctcagtcgatacaactgtctccaggcttcctgatgaaattaca
caaagtccaaaactacagcttgacaataacattgcattaagtacctctctacatagtgga
agttttccatcgcctccacgaaccactgctgtacttattccagggctgtctgagaaagta
attcacaaaccaatagtacaggtcacaccatcaagcattccattagaactgcaaagcttg
gaaccatctatggcaccccaggcttcacctacccgtgaacggtccccagatgttatctca
agtgcttccactgctgtgtcacaagatattccggagattgcctcagagaccctgcaaaga
agttacccagcacctatatcattaggcctgacccttgaagatactgacacaaatcatgct
cctagcatgagctctgcagcctctgccctacagcttctttcagcccgtaattgtaacata
ccagagcatggacaccgaccattagagcctggattgtctggagctccagatgaattagtt
ggtgctgagaccctgactgagagaagtattcataaggataaggtagatgaagtcatatcc
cagccttggcctgcagcacctgacattacaagggagaccaggaataatttatctgaaagt
gaccatgatgatgaagtggccagtctggtaactgctataaacagctttggaggaaagggt
cagagcccaaggttgcttgtaaaggagtggaaaaccagtgtatctccaaattcttcaccc
aaaggaaagcgaaaaaaggaggaggatggggggacaactaaccactcacgacaattgaag
tctacaacgagcttcgagcagcatgaggaattgatggctcttctatatagtcaacaaaga
gaactttctgaacttcgtcagaatcagcaggatctcatgcagaggctcactgatcattta
gatgcaactcaaagttctatcatgggacatgtggaacgtgtcattgacacacagcaagca
caagaacaaagaagattagatcgaatcctaagtgacggacagcagcgaactggtcagcta
caagaatatctttctcagcaactttcacattcactgtctgggtcactaaccaatcgtctt
gacaaaactatacgggaagagattaaaaagactgttccgctatgtataaataaaactctg
gagcctgtgactgggcaacttagtagcacaattgcagcaaaattcacatcagtggaggga
acagtaaaggacagtgttatcaagatagtcaaatccaagaatatcactgatgccgttggt
cgggcaattgcagattctcttcaaataccaattcagactgcataccgagaagcttttcag
agcattgtccttccagcatttgagaaaggatgtcagtctatgtttcagcagataaatggc
agcttccgacaaggcacacaagaatatatgcagcagttggagacgcatcttaaaaacaga
aaaatacatgaccaagaaacacgtgagcctcttttgacacaacttcatcaacttatagaa
tcacttcagactacaacagaccaactgtcttctaacttgaccagcggtatgaggtcagaa
gtccagcatcagctacatgtagctgtgggaaatatgcaggactctattctgaaccatgtc
caaaggataataaaggaagaagtaaaccttgctatgaaggaacagcaagcagcagtcacc
tcgagcattatgcatgtaatgcgatctgctgccgggactccaataccatcttcccatttt
gactttcactcacagcagacgcacatattgcaacttctgcagcaagggaacctaaatcaa
gctttccagcaggctctaactgcttcagatttgaatctaattctgtatgtttgtgaaaca
gtggattcccaacaagtgtttggacaacacccgtgtccacttactcagcctgtcctgcta
tctctcatccagcagttgtcttttgatcttggcacccgtactgagctcaaactgaactat
ttggaagaagcagtgatgcatctggatcacagtgaccctgtaactagagatcacatgggc
agtgtaatgacccaagtgcgacagaaattgttccagttcttacaagtggagcctcacaac
cctctacagaagccagctcggcgcctcatgattatgttgcaagggttggtcaccccaaat
atgagctag
DBGET
integrated database retrieval system
