Nanorana parkeri (Xizang Plateau frog): 108789838
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Entry
108789838 CDS
T04897
Symbol
COL6A3
Name
(RefSeq) collagen alpha-3(VI) chain
KO
K06238
collagen type VI alpha
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr04510
Focal adhesion
npr04512
ECM-receptor interaction
npr04518
Integrin signaling
npr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108789838 (COL6A3)
04518 Integrin signaling
108789838 (COL6A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108789838 (COL6A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108789838 (COL6A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npr04147
]
108789838 (COL6A3)
00536 Glycosaminoglycan binding proteins [BR:
npr00536
]
108789838 (COL6A3)
Exosome [BR:
npr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108789838 (COL6A3)
Glycosaminoglycan binding proteins [BR:
npr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108789838 (COL6A3)
Hyaluronan
Extracellular matrix or blood plasma proteins
108789838 (COL6A3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
Motif
Other DBs
NCBI-GeneID:
108789838
NCBI-ProteinID:
XP_018415447
LinkDB
All DBs
Position
Unknown
AA seq
2978 aa
AA seq
DB search
MVKMREHGLLPLVALLCLMLSGIHRLDAQQQEDSADLVFLIDGSNNVGRTGFNAIRDFLA
NYVERRLEVGRSRIQIGVVQYSDDVKIEFTLDEHTTKQELINALKRLQYVGGEEANMGAA
VEYVVEQLFTSAAGSRREEGVPQSLMIITGGPSSDELRDAANSLRLNSVITFGVGAERAD
NNELQQIATDESFVFTVPQFQVLGQLESQIVPYIAGVAQRTIVLQPPTVITEVTEVNKRD
IMFLIDGSSDLGGPSFSAIRELIIKIVNRLEIGSDLVQVGLAQYGRDVKPEFYLNSFGAK
KEVLAHLKKMKILNTTPLNTGAALSYVQKNFLIASAGSRVDEGIPQLIVLITGGQSRDDI
VQPSLALKRAGILTFAIGSKNADEAELQEIAFDSTLVFQPAEFKQVPLQVILPQVLTPLK
TLTASVSERTTEVLTQRDIVFLVDGSVNVGSANFPLVRDFLIDVINNLGISSEGTRIGLA
QFSDTPKTEFYLNALTSKSDLLNRLGQIRTQGGNLLNIGSALRFVLRNHFTRSAGSRIEE
NIPQILVVLVAGKSSDNIKDAANDLMRSKVLTFCIGVGDADKEELENIAFNPQLIYEMDD
FRALPGLREQILAPLTTFVRGEVTEVTVTEDSKRDILFLIDGSTNIAGRFPGIRTFVASI
IDGLDVSPDGTRVAVGLVGENVKEEFKFNTFATKADVVSTVRNMRFKPSKEFKLGVALDY
AHDSLFTPESGSRIREGVPQYLVLLAAGKSADSVDNAAIKLKTAGIVTFAIKAQRAVTEE
LEKIVLDPQFVLASDSLADLSTIQSEFVNLIKTISVVLPTQSCKRKDIVFLIDGSNEGRS
SFPSLRSFIQRVVEGLDVDQDKIRIGVVQYSDTTRPNFQLNTHPDRQGVLNAVQSLTPMG
GSTLNTGAALDYVTTNVFTSSAGSRASEGVPQFLILLTTGRSRDNVQRPASNLKNSGVVP
FAIGVRNADTTELQTISFKPDFAIPVSDISQLGNVYQIITTRVSELKTDDIEILKRTPSF
PTRAKRDVVFLIDGSRDATPEFNNVKELIGRLVETLDVSQDNTRVAVIQFSEDPKVEFLL
NAHSTKDEVQSAVRRIRPKGGSSANIGNALEYVSKNIFTRPAGSRVEEQVPQFLILTSSG
PSSDNIDEGARQIKSSSIVPFLIGKNIDSEEASKITLNKEFIYGVSSFRELPNLDESLLT
SVTTLDQEKISKIYKQITVVTNEIDPDRRDVVFLVDGSTKTGSEGLANIRDFIIKVIQNF
QIEPNKVRVGLVQFSNDPTSVFYLKTHTTKQDLISSVRRLRLKGGTSLNIGKALDYVSKN
QFVKSAGSRIDEGVPQHLVLLTGGKSGDDVRGAARILGTNGVKSLAVATSGADRTEIETI
VTDPRYLFTIKEFTELPNIETILFKSFTGPIDPTSPSVLEPASSKSGKKEADIVFLVDGS
MNLGRDSFKEVLQFVSGIVDAVIEDDDAIQIGLAQYNSDVTDEFFLKDHNNRDIIMDAVT
KAEFKGGRLANLGIAIRHIQDKHFVKEAGSRIGTGVPQVAFIITGAKSVSDGQSAALALA
SKGVKVFSIGVGTISNEEITKIASEAPSAFRAPTVQALSELNEQVLITLETALQKRSICP
DMIGAVKDCNLEVIIGFDVDVSAGQDVFAFQRGLKPKLGQILERISNMQKISCSGDKKPS
VKVAVLSQGRTGPVEAFDFSDYRIELADKITTMGTRGPYVLNGRTLQTYLNKFNNAGEPK
SVKVFIHMTDGVDANMSELQQASAALQASGVKALLFVGLESVPRFDQIMQLEFGRGFTYN
NPLKLNRVDLDYEIIEELDNIAEKGCCGVPCKCSGQRGDIGPPGVIGTKGAPGLKGHQGF
PGEEGGPGERGPPGVNGTQGFQGCPGPRGGKGGRGFNGDKGEVGEIGLDGIDGEEGKRGS
LGSAGEGGSQGPRGEKGQKGGIGERGDQGLRGDPGEQGTDSPQRGPKGGKGEAGSVGEPG
RDGVPGTNGVVGKAGGRGRRGPPGVKGNSGPNGTPGGVGEQGLRGPQGPPGQQGTPGTRG
EQGSSGPRGSGGTPGPAGDRGRPGQLGRKGEPGDIGPKGSDGPVGPRGETGDDGRDGAGN
PGLKGRKGENGFPGYPGQKGDPGDKGPNGESGPKGSRGRRGNAGDPGKGGTKGDPGHSGP
SGLKGEREGSRDQCGLVKTIRNTCPCCYGKQECPLFPTDLVFAIDTSSDVNRNQFNNMRE
AAVRVVNQLSISESNCPRGARVALLTYNSEVTTEVRFSEGLRKQALLTQMENLQLVTSNK
QRSLDGVMSFVARNTFKRSRGGFLTRKVAVFFSNAPTRASPQLNEAVLKLYDAGVSSVFL
TVREDRPLVNALKVNNTEAGQAIILGSGAQLNETIRKVLSCFVCLDVCEPASECGVGIPR
GDLRFRRSATTDVDIDLAFLVDSSDSTNSAQFAEIKRFVSHVIGQLELSPDPKSSSHHAR
ISILQHAPYEHQINSSFPPVRIDVGLTEYTEKEKLQAFVLTKMTQLYGTRSLNNAIKYVV
EHVLESAPNPRAMKVIFLILTGDVKPHELKQLRQTVIEAKCKGYFFVILSVGKKVHTGHL
NSLASEPHDVFSKKVGKASELNEETLLRFGMQLPGFISSENAFHLSPEIQSQCGWFQNDQ
PPSTNESTNEATDDSLVPDKILSSEKPEVITARTSINTLTDVTLTPETTTMQRTELQIFN
ITENSVRLSWTSSDSLKPHVYELSVISLADQSLVLKQNVTGTERLIGGLASGQMYQVTIT
GQHKSLGLITYQATFATSNSQPKSEVVVPEVVVPEDVPEVVVPEIVVPEVTVPEEVVGSD
TAYTTEPLNSPEIDPCELDLDMGTQCKENEVKWFFDKTNKICTQIWYGGCGGNANKFDTE
AECISRCQKTLVEKSMQLPALETKAFPVGPEACKLQKEEGTCRDFMLQWYYDSETKSCTR
FWYGGCGGNENRFGTQKECEKICITAPLNPGVVSVIGT
NT seq
8937 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagatgagggagcatggcctactgccgctggtggcccttttatgcctaatgctc
tcagggatacataggctggatgcacagcaacaggaagactcggctgacctggttttcctc
attgatggctcaaacaatgttggacgcacgggtttcaatgccatccgtgacttcttggcg
aattatgtggagagacgattggaggtgggaaggagtcggatacaaataggagtggtgcag
tatagtgatgatgtcaaaatagaatttaccttggatgaacatactaccaaacaagagctg
ataaatgccctgaagagattacagtatgttggaggagaagaggcaaatatgggggctgct
gttgagtatgtggtggagcagctatttacttcagctgctggaagccgaagagaggaagga
gtccctcaatcactaatgatcatcactggtgggccgtcaagtgatgagttgagagatgct
gccaattctttaagacttaacagtgtcatcacatttggcgttggtgcggaaagagcagac
aacaatgaattgcagcaaattgcaaccgatgagtcctttgtgtttaccgtgccccagttc
caggttttgggtcaactggaaagccaaattgttccatacattgctggagtagcccaaagg
acaattgttttacagcctccaactgttataacagaagttactgaagtcaacaagagggac
ataatgttcctgattgatggttccagtgatcttggagggccaagtttttctgccatccgt
gaattaattataaagatagtcaacaggttggaaattggttctgatcttgttcaagtagga
ttggcccagtacggcagagatgtaaaaccagaattctacctgaacagctttggtgccaaa
aaggaggtccttgcgcatttgaaaaagatgaagattttgaataccacaccattaaatacc
ggtgctgctctgagctatgtccagaaaaatttccttattgcatctgcaggaagccgtgtg
gatgaaggaatcccacagcttattgtactcatcactggtggacaatcaagagatgacatt
gtccagccatcactggctctcaagcgggcgggaatcctgacctttgcaataggatccaag
aatgcagatgaagctgagcttcaagaaattgcttttgattctacattggtttttcagcct
gcagaattcaaacaagttcctctacaagttatacttcctcaggtgctgactcctctgaaa
accttaacagcaagtgtttctgaacgaacaactgaagttctaacccaaagagacatcgtc
ttcctagtggatggttctgtcaacgttggaagtgccaactttccattagtcagagacttt
ctcatcgatgtcattaacaaccttggtatcagcagtgaaggcactcgaattggcttggcc
cagtttagtgacacccccaaaactgaattctatctaaacgccctgacctcaaaatctgat
ctcctgaaccgtttggggcagataagaacacaggggggtaatctcttaaacattggctca
gcacttcgatttgttctccgcaatcatttcacaagaagtgctggcagcagaatagaggaa
aacattccacagattctcgtggtacttgtggctgggaagtcctcagacaatattaaggat
gctgcaaatgacctcatgagatcaaaggttttgaccttttgtatcggggttggagatgct
gataaagaagagttggaaaacattgcatttaacccccaactgatttatgagatggatgat
ttcagggccttgcctggcctcagagagcaaatcttagcacctcttacaaccttcgttaga
ggagaagttacagaggttacagtaacggaagacagcaaacgggacatcttattcctgatt
gatggctctaccaatattgctggaaggtttcccggtatacgaacttttgtggcaagcatc
attgatggtctcgatgttagcccagatggcactcgtgtcgctgtgggcttagttggtgaa
aatgtcaaagaggaatttaagtttaatacatttgccaccaaggctgatgtagtcagtaca
gtccgaaatatgaggtttaaaccaagcaaagagttcaagcttggagttgcactggactat
gctcatgacagccttttcacaccggagtctggaagtaggatccgagagggagtaccacag
tacttagttttgcttgcagcaggcaaatctgcagacagtgtagacaatgcagctattaag
ctgaaaacagctggtattgtgacatttgcaatcaaggcacaaagagctgtcactgaggaa
cttgagaagattgttttggatccacaatttgttttagcctcagactctcttgcagatctt
tctaccatccagtctgagtttgttaatctcataaaaaccatttcagtcgtgctgccaact
cagtcttgtaaaaggaaggacattgtatttttgattgatggatccaatgaaggcagatcc
agctttccatctctacgctccttcattcagagagtggtggaggggcttgatgttgatcag
gataagattcggataggagttgttcagtacagtgataccacaagacccaacttccagctt
aacactcatccagaccgccagggagtcctcaatgctgtacaaagtctaacacctatggga
ggttcaacactgaacacaggagcagccttggactatgttactacaaatgtgtttaccagt
tcagctggcagtcgggcttctgagggagtgccccaattcttaatcttgctgacaactggc
aggtcaagagataatgttcagagaccagcctcaaacctcaaaaattctggagtagttcca
tttgccataggagtccgcaatgctgacactactgagctgcagacaatttcttttaagcca
gattttgccattcctgtttctgacattagccaactaggaaatgtttaccagatcataaca
acaagagtgtctgaacttaagactgatgatattgaaattctgaaaaggacaccttcattt
cccacccgtgcaaagagggatgtcgtgtttcttatagacggttccagggatgctactcct
gagtttaacaatgtgaaagagctaattggacgcctagtagaaacattggatgtcagccaa
gataatactcgggtggctgtgatccagttcagtgaggaccccaaagtagagtttttgcta
aatgctcattccactaaagatgaggttcagagtgcagtgagaaggataagaccaaaggga
ggatcatcagcaaatatcggtaatgccttagagtatgtatctaaaaacatttttacaagg
ccagctggaagccgagtagaagagcaagtccctcagttccttatattgacctcctccgga
ccttcatcagataacatagatgaaggcgcaagacagattaaatcatcttccattgttcca
ttcttgattggaaagaatatagattctgaagaggccagtaaaatcactttgaataaggaa
ttcatatacggtgtttctagtttccgggaactgccgaacttggatgaaagtctgctgaca
tcggtcaccaccctggatcaagaaaagataagcaagatttataaacaaatcacagttgtt
actaatgaaattgatccagacaggcgggatgtggtcttcctggttgatggctctacaaag
acaggttctgaaggactggcaaacatcagggatttcatcattaaagttattcagaacttt
caaattgaacctaataaagtcagggttggcctggttcaatttagtaatgatcctacctca
gttttctacctaaaaacccatacgaccaagcaagacttgattagcagtgtccgccgtcta
cgactcaaaggaggaacgtcactgaacattgggaaagcactggattatgtgtccaaaaat
caatttgtgaaatcagctggcagtagaatagatgagggagttccccagcatttggtactc
ctcactggaggaaaatctggagatgatgtcaggggagcagcaaggatacttggaactaat
ggggtgaaatcgcttgctgtagctaccagcggtgctgacaggactgaaatagaaaccata
gtgacagacccacgttacctttttaccatcaaagaatttactgagcttccaaacattgaa
accatattattcaagtcttttacaggacccattgacccaacttcaccatcagtgctagaa
cctgcatccagtaagtctgggaagaaagaagctgatattgttttccttgtggatggctcc
atgaatttaggaagggatagctttaaggaggtccttcagtttgtctctggcatagtggat
gctgtaattgaagacgatgatgccattcagatcggactggctcagtacaattcagatgtg
accgatgagtttttcctaaaggaccacaacaaccgcgacataatcatggatgctgtaacc
aaagcagagtttaaaggaggacgtctggccaaccttggcattgctattcgtcacatacag
gacaagcactttgtaaaagaagcaggcagcagaattggcacaggtgttcctcaggttgct
ttcattatcacaggggcaaagtcagtcagtgatggacaatctgcagcacttgctcttgcc
agcaagggagtcaaagtattttccatcggagtagggactattagtaatgaagagattact
aaaattgcaagtgaagcaccaagtgctttcagggcaccaactgtgcaggctctttcggag
ctgaatgaacaggttctgatcactttagagacggctttgcagaagaggagtatttgccca
gatatgattggtgctgtcaaagactgtaatctggaggtgattataggatttgatgtcgat
gtaagcgctgggcaagatgtctttgcatttcagagagggctgaagcctaaactaggacaa
attctggaacgaatttccaacatgcaaaaaataagttgcagtggtgacaaaaagccttcg
gtgaaagttgctgtcttgtcacagggcagaacagggcctgtggaggcatttgacttttct
gattaccgtatagaactggctgacaaaatcactaccatgggcactcgagggccttatgtg
ttgaatggccgaactctgcagacatatttgaacaaattcaacaatgccggggaacccaaa
agcgttaaggtatttatccacatgacagatggagttgatgcaaacatgtctgaattgcag
caagcttctgcagccttacaagcttcaggagtgaaggcgctgttatttgtggggttggaa
agtgttcccagatttgatcaaattatgcagttagaatttggaagaggattcacttacaat
aacccattgaaattaaaccgtgtggatctggattatgagatcatcgaagagctggataac
attgcagaaaaaggatgctgtggagtgccatgcaaatgttctggacagagaggtgatatt
ggacctccaggtgtcattggaacaaagggtgcaccaggtctcaaaggacaccaaggcttc
ccaggagaagaaggaggaccaggagagcgaggtcctcctggtgtgaatggaacacaaggt
ttccagggatgtccaggtccaagaggaggcaagggtggccgtgggttcaatggagataag
ggtgaagtaggagaaattggcctggatggaatagatggagaagaaggtaaacgaggttct
ctaggatctgcaggagaaggaggcagccaagggccacggggagaaaaaggtcagaaagga
ggaataggggagagaggagatcaaggtttacgaggtgatccgggtgaacagggaactgat
tcacctcagagaggaccaaaaggaggaaaaggagaagcaggaagtgtgggtgagcctgga
agagatggtgtaccaggaacgaatggtgttgtagggaaagctggaggtcgtggccgtaga
ggacctcctggagttaagggtaatagcggccctaatggtacccctggaggagttggagaa
caagggctgaggggtcctcagggtcctccaggacaacaaggcacgccaggcacaagggga
gaacaaggtagctcaggaccaagggggtcaggaggcactcctggacctgctggtgatcgt
ggcagacccggacaactagggcgcaagggggagcctggagatattggacctaaaggatct
gatggacctgttggaccacgtggtgagacaggagatgatggtcgtgatggagctggaaac
cctggtcttaaaggaagaaagggggaaaatggattccctggatatcctggacaaaaggga
gatcctggcgataaaggacctaatggagagtctggacctaaaggaagcagaggacgtagg
ggcaatgcaggtgatcctggtaagggaggcactaaaggggatccaggacattcaggacca
agtggcctgaagggagaacgagaaggttcaagagatcaatgtggacttgtgaagactatc
agaaacacatgcccttgctgctatggtaaacaagaatgccctctgttccccactgacctg
gtgtttgctattgacacatcttcggatgtgaaccgaaatcagtttaacaacatgagagaa
gctgctgtgcgagtggttaaccagctgtcaatttctgagagcaactgtccaagaggagcc
cgcgttgctttgcttacctacaatagtgaggtcaccacagaagttcgcttttctgaaggc
ctcaggaaacaagcactgctcactcagatggaaaacttgcaactggttacatctaacaag
caaagaagcttggatggtgtcatgtcttttgtggcacgaaacacatttaagaggtcgcgt
ggaggtttcctgacaagaaaggtggctgtgttcttcagtaatgctccaactagagcctca
ccacaactaaatgaggctgtacttaagctgtatgatgctggcgtgtcttctgtgttcctt
acagtgagagaagacaggccattggtcaatgctttaaaggtcaataacacagaagcaggc
caggctataatccttggaagtggcgctcaattgaatgaaaccatccgcaaagtcctttcc
tgctttgtatgtctagatgtgtgtgagccagctagtgaatgtggagttggtattcccagg
ggcgatctccgttttagacgctcagcaactactgatgtagacattgacttagccttcctt
gtggacagttcagactccacaaattcagcccagtttgctgagataaaaagatttgtctcc
catgtgattggacagttggagctcagtccagatcctaaatcctcttcccatcatgcacgc
atttcaatactccagcatgctccctatgaacatcagattaattccagcttccctcctgtg
agaattgatgtaggactgactgagtacactgagaaagagaaacttcaggcatttgttcta
accaaaatgactcagctgtatggaacacggtcattgaacaacgctatcaagtatgtggtg
gaacatgtgcttgagagtgctcccaacccaagggccatgaaggtcatcttccttattttg
actggagacgtgaagcctcatgagctcaaacagttgcgccagactgtaatcgaggccaaa
tgcaagggctacttctttgtgattttgagtgtagggaagaaggtacatactggacatttg
aactcactggctagtgaaccacatgatgttttctccaagaaagttggaaaggcgtcagaa
ctaaatgaagagaccctgctgagatttggaatgcaactgcctggatttataagcagtgaa
aatgcattccatctgtctcctgaaattcaaagtcaatgtggttggttccagaacgatcag
cctccaagcaccaatgaaagcaccaatgaagcgactgatgattctctagtacctgacaaa
atattatccagtgaaaagcctgaggtcataacagcacgaacaagcatcaacacccttaca
gatgtcaccttaactccagagaccacaacaatgcagaggactgagcttcagatatttaat
ataacagagaacagtgtgcgtctgagctggaccagttctgattccctgaaaccccacgtc
tatgagctcagcgtcatctcactagcggaccagagtctagtccttaaacaaaatgtcaca
ggcactgaaagacttattggaggacttgcaagtggacagatgtaccaagtcaccattact
gggcagcacaagagccttggcctgataacttaccaagcaacattcgctactagtaattct
caacccaagtctgaggttgtggtgccagaggttgtggttccagaagatgtgccagaagtt
gtagtgccagagattgtggttccagaggttacagtgcctgaggaagtggtgggttctgac
acagcatacaccacagaaccactgaacagccctgaaatagatccttgtgagctagatctg
gacatgggcacccaatgcaaggagaatgaggttaagtggttctttgacaagacaaacaag
atttgcacccagatttggtatggtgggtgtggtggcaatgccaataaatttgacacagaa
gctgaatgcatcagtaggtgtcaaaagacattggttgagaaatccatgcagctaccagcg
ttggaaacaaaagcattcccagtaggacctgaggcatgtaaactgcagaaagaggaaggc
acctgcagggattttatgctacagtggtactatgattcagaaaccaagagctgcacacga
ttctggtatggtggctgtggaggaaatgagaacaggttcggcacacagaaagaatgtgaa
aagatttgtattacagcacctctgaatcccggtgtagtctctgtaattggaacataa
DBGET
integrated database retrieval system
