KEGG   Nanorana parkeri (Xizang Plateau frog): 108790085
Entry
108790085         CDS       T04897                                 
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
  KO
K12816  pre-mRNA-processing factor 17
Organism
npr  Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:npr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108790085 (CDC40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:npr03041]
    108790085 (CDC40)
Spliceosome [BR:npr03041]
 Complex C
  Other components
   Step II factors
    108790085 (CDC40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 EIF3I WDR55 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_SCAP WD_LRWD1 Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 108790085
NCBI-ProteinID: XP_018415778
LinkDB
Position
Unknown
AA seq 567 aa
MAAVSALVSYGSGSDSENEAEDKGLGSHLHPLPAGAGTLVVVNSAPEVAVKETVDVGLHL
DPRLKEINYNPTYDTLFAPELGPNNPFKTQQMAAPRNMLSGYAEPAHINDFMFEQQRRTF
ATYGYALDPSLDIQDTTTKYIGSVDEAEKNQGLTVFESSQKKLEKRKKVKGSDASNIDGF
LGPWAKYIDEKDGAKPSEEEQKELDEITAKRQKRGKQEDDKPADEKTVLHVKEMYDYQGR
SYIHVPQDVEVNLRSTEPPEKCYLPKKQIHVWSGHTKGVSAVRLYPHSGHLLLSCSMDCK
IKLWEVYNERRCLRTFIGHSKAVRDICFNNNGTQFMSAAYDRYLKLWDSETGQCISRFTN
RKVPYCVKFNPDEDKQSLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTITFVDENRR
FVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQN
RFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTKLYSRIKAHDKV
CIGAVWHPHETSKVITCGWDGLIKLWD
NT seq 1704 nt   +upstreamnt  +downstreamnt
atggctgccgtaagcgctttagtttcttacggtagtggctctgactctgaaaacgaagcc
gaggacaaagggcttggctcccacctgcacccattacctgccggggcgggaacgctggtg
gtggtgaactcggcgccggaggtggcagtgaaggaaacagttgacgtcggacttcatctt
gaccctcgtcttaaggaaataaattacaaccctacctatgacaccttatttgcacctgag
cttggacccaacaatccatttaaaacccagcagatggctgctccaaggaacatgctttca
ggatacgcagaaccagcacacattaatgacttcatgttcgagcagcaaagaagaacgttt
gcaacatatggttatgccctggatccatctttggatattcaggatacaaccaccaaatac
attggttctgtggatgaggctgagaaaaaccaagggctaacggtatttgaatctagtcag
aaaaaactggaaaagaggaaaaaagtgaaaggtagcgatgcttctaacatagatggcttc
cttggtccatgggcaaaatatattgatgaaaaggatggtgcaaagccttcagaggaagaa
cagaaggagctggatgagataacagctaaaagacagaagagaggcaaacaagaggacgat
aaacctgctgatgaaaagactgtattgcatgttaaagaaatgtatgattaccagggcaga
tcatatatccacgttcctcaagatgtggaagttaatctacggtccacagaacctccagaa
aaatgttacctgcccaagaaacagatccatgtctggtctggacatacaaagggagtcagt
gctgtgaggctatatcctcattctggacatttactgctgtcttgttccatggactgcaag
attaagctctgggaagtgtacaacgaaagaagatgtttacggacttttataggccacagt
aaagctgttcgggacatctgttttaacaataacggaacgcagttcatgagtgcagcttat
gaccgctatctcaagctgtgggactcggaaacagggcagtgtatatcaagatttacaaac
agaaaagttccatactgtgtcaaattcaatcctgatgaagataaacagagtttatttgtg
gctggaatgtccgataagaaaatagtgcaatgggatattcggtctggcgaaattgtccaa
gagtatgaccggcatctgggagctgtcaacaccattacttttgtggatgagaacaggcgc
tttgtaagcacctcggatgataaaagcttgagagtttgggagtgggatattcctgtggat
ttcaaatacatagcagagccaagtatgcactcaatgccagcggttacactgtcacctaac
ggtaaatggctggcctgtcagtcaatggacaaccaaattttaatatttggcgcacagaat
agattccggctaaacaaaaagaagatttttaagggtcatatggttgcgggctatgcttgt
caagttgacttttcaccggacatgagttatgtggtttctggtgatgctgatggaaagctg
aacatctgggattggaagaccacgaaactgtacagcagaattaaagctcatgacaaagtg
tgcattggtgcagtatggcacccacatgaaacatcaaaagttatcacatgtggatgggat
ggcctcatcaaactatgggactaa

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