Nanorana parkeri (Xizang Plateau frog): 108790085
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Entry
108790085 CDS
T04897
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108790085 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npr03041
]
108790085 (CDC40)
Spliceosome [BR:
npr03041
]
Complex C
Other components
Step II factors
108790085 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_SCAP
WD_LRWD1
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
108790085
NCBI-ProteinID:
XP_018415778
LinkDB
All DBs
Position
Unknown
AA seq
567 aa
AA seq
DB search
MAAVSALVSYGSGSDSENEAEDKGLGSHLHPLPAGAGTLVVVNSAPEVAVKETVDVGLHL
DPRLKEINYNPTYDTLFAPELGPNNPFKTQQMAAPRNMLSGYAEPAHINDFMFEQQRRTF
ATYGYALDPSLDIQDTTTKYIGSVDEAEKNQGLTVFESSQKKLEKRKKVKGSDASNIDGF
LGPWAKYIDEKDGAKPSEEEQKELDEITAKRQKRGKQEDDKPADEKTVLHVKEMYDYQGR
SYIHVPQDVEVNLRSTEPPEKCYLPKKQIHVWSGHTKGVSAVRLYPHSGHLLLSCSMDCK
IKLWEVYNERRCLRTFIGHSKAVRDICFNNNGTQFMSAAYDRYLKLWDSETGQCISRFTN
RKVPYCVKFNPDEDKQSLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTITFVDENRR
FVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQN
RFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTKLYSRIKAHDKV
CIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgtaagcgctttagtttcttacggtagtggctctgactctgaaaacgaagcc
gaggacaaagggcttggctcccacctgcacccattacctgccggggcgggaacgctggtg
gtggtgaactcggcgccggaggtggcagtgaaggaaacagttgacgtcggacttcatctt
gaccctcgtcttaaggaaataaattacaaccctacctatgacaccttatttgcacctgag
cttggacccaacaatccatttaaaacccagcagatggctgctccaaggaacatgctttca
ggatacgcagaaccagcacacattaatgacttcatgttcgagcagcaaagaagaacgttt
gcaacatatggttatgccctggatccatctttggatattcaggatacaaccaccaaatac
attggttctgtggatgaggctgagaaaaaccaagggctaacggtatttgaatctagtcag
aaaaaactggaaaagaggaaaaaagtgaaaggtagcgatgcttctaacatagatggcttc
cttggtccatgggcaaaatatattgatgaaaaggatggtgcaaagccttcagaggaagaa
cagaaggagctggatgagataacagctaaaagacagaagagaggcaaacaagaggacgat
aaacctgctgatgaaaagactgtattgcatgttaaagaaatgtatgattaccagggcaga
tcatatatccacgttcctcaagatgtggaagttaatctacggtccacagaacctccagaa
aaatgttacctgcccaagaaacagatccatgtctggtctggacatacaaagggagtcagt
gctgtgaggctatatcctcattctggacatttactgctgtcttgttccatggactgcaag
attaagctctgggaagtgtacaacgaaagaagatgtttacggacttttataggccacagt
aaagctgttcgggacatctgttttaacaataacggaacgcagttcatgagtgcagcttat
gaccgctatctcaagctgtgggactcggaaacagggcagtgtatatcaagatttacaaac
agaaaagttccatactgtgtcaaattcaatcctgatgaagataaacagagtttatttgtg
gctggaatgtccgataagaaaatagtgcaatgggatattcggtctggcgaaattgtccaa
gagtatgaccggcatctgggagctgtcaacaccattacttttgtggatgagaacaggcgc
tttgtaagcacctcggatgataaaagcttgagagtttgggagtgggatattcctgtggat
ttcaaatacatagcagagccaagtatgcactcaatgccagcggttacactgtcacctaac
ggtaaatggctggcctgtcagtcaatggacaaccaaattttaatatttggcgcacagaat
agattccggctaaacaaaaagaagatttttaagggtcatatggttgcgggctatgcttgt
caagttgacttttcaccggacatgagttatgtggtttctggtgatgctgatggaaagctg
aacatctgggattggaagaccacgaaactgtacagcagaattaaagctcatgacaaagtg
tgcattggtgcagtatggcacccacatgaaacatcaaaagttatcacatgtggatgggat
ggcctcatcaaactatgggactaa
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