Nanorana parkeri (Xizang Plateau frog): 108791728
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Entry
108791728 CDS
T04897
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108791728 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108791728 (PARN)
Enzymes [BR:
npr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108791728 (PARN)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108791728 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
108791728
NCBI-ProteinID:
XP_018417791
LinkDB
All DBs
Position
Unknown
AA seq
487 aa
AA seq
DB search
MEITRINFKDQLPNVYQAIEESDFLAIDGEFSGISDGPSVSTLTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDNTVSKYITKSFNFYIFPKPFNRNSPDKKFVCQSSSIDFLVNQG
FDFNKVFRNGIPYLNQEEERQLREQYEEKRSQANGASAALYISPNTAKTPVSIPDEQKGF
VDKTVERVEAFMKDEEQKTIELEPCTGYQRKLIYQTLNWKYPRGTHLETVESEKKERYIV
ISKLDEDEILLQEELNDAVGFSRIIHAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELN
EFKEVTTCVFPRVLDTKLMATTQPFKEIIYNTSLAELEKRLKEAPFKPSKVGSPEGFPSY
STNSEQLHEAGYDAYITGLCFISMANYLGSFLSPPKGHISARSKIIRPFFNKLFLMRVMD
IPYLNLEGPDXXXXXPKRDNVLHVSFPKEWKTSDLYQLFSAFGNIQVSWIDDTSAFVSLS
KADQVQI
NT seq
1462 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaccaggatcaattttaaggaccagttgccaaacgtctaccaagctattgaa
gagtcagactttttggctattgatggggagttttcaggaataagtgatggtccatcagtt
agcactttaacaaatggctttgatacgccagaagaaaggtaccagaaactgaaaaagcac
tctatggacttcctgctgtttcagtttggtctatgcacttttaaatatgacaacacagtg
tcaaaatatattaccaaatcctttaatttttacattttcccaaagccattcaacagaaat
tctccagacaagaagtttgtttgtcagagctcaagtatagactttctggttaaccagggt
tttgattttaataaagtatttcgtaacggaattccatatttaaatcaggaggaggaacgt
cagctcagagaacagtatgaggagaaacgctcacaagcaaatggtgcaagcgcagcatta
tacatctctcctaatacagcgaagactccagtctccattcctgatgagcagaaaggtttt
gttgacaaaacagttgaacgtgtggaagcttttatgaaagatgaagaacagaaaactata
gaattggagccatgtacagggtatcaaaggaagcttatctaccagacgttgaactggaaa
tatccacgaggcacccatttagaaactgtcgaatctgagaagaaggaaaggtacattgtt
atcagcaaacttgatgaagatgaaattttattgcaggaagagcttaatgatgctgttggg
ttttcaagaattattcatgcgatttcaagctctggtaagcttgtggttggccataatatg
cttttggatgttatgcacacaatacaccagttcttttgtcagttacctgatgaattaaat
gaatttaaagaagtcacaacgtgtgtattcccacgagtactggataccaaacttatggca
acgacacaaccttttaaggaaattatttataacacatcccttgctgaattggaaaagaga
ttaaaagaggctccttttaaaccttcaaaagttggcagtcctgaaggctttccaagctac
agcacgaactctgagcaactacatgaagccggttatgatgcctacatcacaggactgtgc
tttatatctatggcaaactatctaggttcatttttgagtccaccaaaagggcacatatca
gcccgatcaaagatcatccgtccattttttaacaagctattcttgatgagggttatggac
attccttacctcaatctagaggggccagactnnnnnnnnnnnntgcctaaacgagacaat
gtcctccatgtatcttttccaaaagaatggaagaccagtgacctttatcaactattcagt
gcttttggtaatattcaagtgtcctggatagatgatacatcagcatttgtgtcactcagc
aaagccgatcaagtgcaaatag
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