Nanorana parkeri (Xizang Plateau frog): 108792389
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Entry
108792389 CDS
T04897
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03013
Nucleocytoplasmic transport
npr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108792389 (UPF3A)
03015 mRNA surveillance pathway
108792389 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108792389 (UPF3A)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108792389 (UPF3A)
mRNA cycle factors
P-body specific factors
108792389 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
108792389
NCBI-ProteinID:
XP_018418662
LinkDB
All DBs
Position
Unknown
AA seq
472 aa
AA seq
DB search
MRSERETPPSVLRGNRENRSSDRKIREVELGGTAGTMKQREERKAALSKVVIRRLPPSIS
KEQLEEQLHPLPAHDYFEFCTADPSLYPHLFSRAYINFRNPDDILLFRDRFDGFIFIDNK
GQEYPAVVEYAPFQKISKKKLKKKDTKAGSISEDLEYKKFLENYCADEEKICANPETLLG
EIEAKTKELIARRTTPLLEYIKNRKLEKQKMREEKREERRRRELEKKRLREEEKRKRREE
ERRKRKEADKQKKLCEKEIRIKLLKKPEKGDEVISEKQNEKIEGTEVEETKWEKSPSGST
KSRAFESFAKDFKEKTQNDSDKEQRDTDRRYRDKEQERQRYHRMDDSRKPRSHYEFDKYL
RRNEEDQKWGKGYNQDRVKKGSHNNSYTAEAVDKLGKEDKCDDMASKKERIRNKLVVAYL
AQDRPAMQLYQPGARSRITTGFTSKYVEEASYRKNDADNISGRSSEKSEGAG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaggagcgagcgggaaacgccgccatccgtgctgaggggcaaccgggagaaccggagc
agtgaccgaaagatcagggaggttgaactgggtgggacggcgggcaccatgaagcaaagg
gaggagaggaaggcggctctcagcaaggtggtaattcgtcgccttcctcccagcatcagt
aaagaacaactagaagagcaactgcatcctctgcctgcacatgattattttgaattttgc
actgctgatccaagtttatacccacatctcttttctagagcctatattaattttagaaat
ccagatgacatcctcctgtttagagacaggtttgatggatttatctttattgacaacaaa
ggtcaggagtatcctgccgtggttgaatatgcaccttttcagaaaatttccaaaaagaaa
ctgaagaaaaaagacacaaaggctggaagtatttctgaagatctagagtacaagaagttt
ttggagaactattgtgcagatgaggaaaaaatctgtgcaaacccagagacccttctggga
gaaattgaagcaaaaacaaaggagctcattgcacgaagaacgactccactccttgagtat
attaaaaaccgaaagctggaaaaacagaaaatgagagaagaaaaaagagaagagaggagg
agacgtgagttggaaaaaaagcgtttaagggaagaagaaaagagaaaaaggagagaagaa
gaaaggcgtaaaagaaaggaggcagacaagcagaagaagctgtgtgaaaaagaaattagg
atcaagcttctaaagaaacccgagaagggtgatgaagtcatcagtgagaaacaaaatgag
aaaatagaaggaactgaagtggaagaaacaaaatgggaaaagtctccttctggatctact
aagagtcgagcctttgaaagctttgccaaggactttaaagaaaagacacagaatgacagt
gacaaggaacaaagggatactgatcggagataccgggataaagaacaagaacggcaaagg
tatcatcgcatggatgatagcagaaagccaaggagccattatgagtttgacaagtatctg
aggaggaacgaagaggaccagaaatggggaaaggggtacaaccaagaccgtgtcaagaaa
ggaagccacaacaacagttatacagcggaggcagtagacaaattgggtaaagaggacaag
tgtgatgacatggcatccaaaaaggagcgcataagaaataagctggttgtggcttacctt
gcgcaggatcgcccggccatgcagctgtaccaaccaggagctcgcagtcgcataactaca
ggatttacaagtaaatatgtagaagaggcttcttacagaaagaatgatgcagacaatata
tcaggacgaagctcagagaagagtgaaggtgctgggtaa
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