Nanorana parkeri (Xizang Plateau frog): 108793752
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Entry
108793752 CDS
T04897
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03013
Nucleocytoplasmic transport
npr03015
mRNA surveillance pathway
npr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108793752 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
108793752 (DDX39B)
03015 mRNA surveillance pathway
108793752 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108793752 (DDX39B)
03041 Spliceosome [BR:
npr03041
]
108793752 (DDX39B)
Enzymes [BR:
npr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108793752 (DDX39B)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108793752 (DDX39B)
Spliceosome [BR:
npr03041
]
Complex C
Other components
EJC/TREX
108793752 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108793752 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108793752
NCBI-ProteinID:
XP_018420278
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAETDVDNELLDYEDDEVDTQAGAETQDLPVKKEMKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEEMLKKSCPHIVVGTPGRILALA
RNKTLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMQQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEQDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaacggacgtggacaatgagctgttggactacgaggacgatgaggtggatacc
caggccggggctgagacccaggacctcccggtcaagaaggagatgaaaggatcctatgtg
tccatacacagctctggctttagagatttcctccttaaacccgaattgcttcgtgccatc
gtggactgcggatttgagcatccgtctgaagttcaacacgagtgcatcccacaagccatc
ctgggcatggacattctctgccaggcaaagtctggtatggggaaaacggcagtgtttgtc
ttggctacgctacagcagctggagcctgttacagggcaggtctccgtgttagtcatgtgt
cacaccagagaactggcatttcagatcagcaaagagtatgaacgattctccaagtacatg
ccatctgtgaaggtggctgtttttttcggcggacttgcaattaagaaggatgaggagatg
ttaaagaaaagctgcccacacattgtggttgggactcctggacgaatcctggcgctggca
agaaacaagacgctaaacctgaaacacatcaaacatttcatcctggatgagtgcgacaaa
atgttagagcagctagatatgcgcagagatgtccaggaaatattccgtatgactcctcat
gagaagcaggtcatgatgttcagcgctaccctgagcaaggagattcgcccagtgtgccgc
aagttcatgcaagatccaatggaaatctttgtggatgacgagaccaagctgactcttcac
ggactccaacaatattacgtcaagctcaaggacaatgagaaaaatcgcaaactttttgat
ctcctggacctgttggagttcaaccaggtggtcatctttgtgaagtcagtccagcgatgt
atcgctctggctcagctgttggtggaacaaaacttcccagctatcgctattcatcgcggg
atgcagcaggaggagaggctgtcccgttaccagcaattcaaggatttccagcgcaggatc
ctggtcgcaaccaatctttttggccgaggcatggacattgagagagtgaacattgccttt
aattatgacatgccggaagactctgatacctacctgcacagggtggcacgtgctggtagg
tttgggaccaaaggtctggccatcacctttgtctcagacgaacaggatgcaaagatccta
aacgaggttcaagatcggtttgaggtcaacattagtgaacttcctgatgaaattgacatc
tcctcgtacattgaacagacccggtga
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integrated database retrieval system
