Nanorana parkeri (Xizang Plateau frog): 108794524
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Entry
108794524 CDS
T04897
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03008
Ribosome biogenesis in eukaryotes
npr03013
Nucleocytoplasmic transport
npr03015
mRNA surveillance pathway
npr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108794524 (NXF1)
03015 mRNA surveillance pathway
108794524 (NXF1)
03008 Ribosome biogenesis in eukaryotes
108794524 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108794524 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108794524 (NXF1)
03009 Ribosome biogenesis [BR:
npr03009
]
108794524 (NXF1)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108794524 (NXF1)
mRNA cycle factors
Stress granule specific factors
108794524 (NXF1)
Ribosome biogenesis [BR:
npr03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
108794524 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
UBA_8
Motif
Other DBs
NCBI-GeneID:
108794524
NCBI-ProteinID:
XP_018421083
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MAEGGRSYIDHDDRVGGGFFPKKRKGRGPFRAKMYSEAGQKHRNRGNYQPNPRSRLDDED
GDVAMSDVHDNARLRFNPYRGGRRRDERQGRDRGASHGNAARDVPHHDRPEARGDRNSWF
KITIPYGKKYEKDWLIGLLQTACSLPFSPIGYYCDHSRAHFFVEDAAVAKALKQISRTFT
DRENFKVTILTQPSQPPAQAREMQMTEEENTHFKLCMQKRYDGAQQALDMSSLRSDPDLV
TNKVDIILNRKSCMQSMLQIIEENVPELLSLDLSNNKLYKLDHMTDIHLKAPNLKILNLS
NNVLRSEKDLDKVKGLKLEILYLDGNPLCDNFRDQNTYISNMRERFPKLLRLDGHELPPP
ITFDVETPTTLPPCKGSYLATDNIKVIVLRFLQQYYAIYDGEDRQGLLNVYHDEACCSLS
IPAVSGQNPARSSLGDYFTNSRNLKRLRDPSLRFKLLKHKRLNVVSFLNELPKTQHDLNS
FVVDVTAQATTLLCFVVNGVFKVEGQSSDPVRAFTRVFIAVPGTEGLLLLVNDQQFIRNA
STDEIRKAFATPAPTPSSSPVPVLAPVPQDMVQAFSQHSGMNLEWSQKCLQDNGWDWEQS
VQIFMRLKAEGKIPDIAFIK
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggtggccggagctatatcgaccatgatgaccgggttggtggaggtttcttt
ccgaagaagcggaaggggcgtggcccattccgggcaaaaatgtatagtgaagcaggtcaa
aagcatcggaatcgtggcaattaccagcctaaccctcgttcccgtctagatgacgaagat
ggagatgtggctatgagtgatgtacatgacaacgcccgtttacgatttaatccttatcgc
ggaggcaggagaagagatgaaagacaaggaagagacaggggtgcttcacatggaaatgct
gctagggatgttccccatcatgatagacctgaggccagaggtgaccgaaacagctggttt
aagattacgattccatatggcaaaaaatatgaaaaggattggctgattggccttttgcaa
accgcctgttcactgcctttttctcctatagggtactattgtgaccactctcgggcccac
ttctttgtggaagatgctgctgttgcaaaagctctgaaacagatctcgaggacttttacc
gacagagaaaacttcaaggttactatacttacgcaaccgtctcagccccctgctcaagca
agagaaatgcaaatgactgaagaggaaaacacacattttaagctctgtatgcaaaagcga
tatgatggagcccagcaagctctagacatgagctcacttcgttctgatccagatcttgtg
acaaacaaagtagacatcattctaaacaggaagtcctgtatgcagagtatgttgcagatc
attgaagagaatgtgcctgagctgttatctttggatctcagtaacaacaaactgtacaaa
ctggatcacatgacagacattcacctcaaagccccaaatctaaagatcctaaacttgtct
aataatgtgctaagatcagaaaaggatctggataaggttaaaggtctgaagctcgaaatt
ctgtacttggatggaaacccactctgcgacaacttccgagaccagaacacatatatcagt
aatatgagagaacgctttccaaaactactgcgactggatggacatgagcttcctccacca
ataacatttgatgtagaaacccccaccacacttcctccatgcaagggcagctacctggct
acagataatattaaagtaatagttttgcgatttcttcaacaatattatgctatctacgat
ggtgaagatcgccaaggcctgctaaatgtttatcatgatgaagcttgctgttctcttagc
atcccagctgtgtcagggcagaaccctgccaggagcagtctgggagattatttcactaac
agcagaaatttaaagcgactgcgagatccctcgcttcggtttaaacttcttaagcacaaa
cgtctcaatgttgttagcttcttgaatgaacttccaaagacccagcatgatctgaactcc
tttgttgtggacgtcactgctcaggctaccactttactttgctttgtggttaatggagtg
tttaaagttgaggggcaatccagtgatcctgtacgtgctttcactcgggtattcatagca
gtgccaggaactgaaggacttcttcttttggtaaatgatcaacaatttataaggaatgca
agcacggatgagattcgcaaagcctttgccacgccggctccgactccatcaagcagccct
gtacctgtgctggcccctgtaccccaggacatggtgcaagcattcagtcagcactctggc
atgaacctcgagtggtctcagaagtgtctccaggacaatggctgggactgggagcagtct
gtgcagatttttatgaggctaaaagccgagggaaaaattccagacattgcctttatcaag
tga
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