Nanorana parkeri (Xizang Plateau frog): 108795120
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Entry
108795120 CDS
T04897
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108795120 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npr03400
]
108795120 (LIG3)
Enzymes [BR:
npr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108795120 (LIG3)
DNA repair and recombination proteins [BR:
npr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
108795120 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
FAD_binding_1
Motif
Other DBs
NCBI-GeneID:
108795120
NCBI-ProteinID:
XP_018421815
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MKSLLKLLILQTARIFSPLSSRSFSNTTTPILRYSLRLPYLSTLQFNFAIRNRSCHSMAE
QRYCVEYAKRGTAGCKKCKEKIAKGMVRIGKIVPNPFSESAGDMKEWYHVKCMFEKLERA
RATTKKIDDLTELEGWQELQDAEKEMINQHVKELAAKAGAAPTPRKKTPSKANQPPTAPS
ASPSTMPAPSPSPLKFSGFSAKPESSHSASSSSSGSSLSAAKCDPKHKDCLLREFRKVCA
MVAEQPSYNAKTQIIQDFLTKGTGGDGFHGDTYLTVKLLLPGVIKSVYNLNDKQIVKLFS
RIFNCNLEEMVRDLEQGDVSETVRIFFEESKTFSPATKSLLTIQEVDDLLNQLSKMTKEE
DQQKVLEDIAHRCTSNDLKCIIRLIKHDLKMNAGAKHVLDALDPNGHDAFKASRNLEDVV
ERVLQNQQQAPGMKRTLSVKATLMTPVQPMLAEACKSVEYAMKKCPNGMYAEIKYDGERV
QVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPKAFPGGNSIILDSEVLLIDTKTSKPLPF
GTLGVHKKAAFQDANVCLFVFDCIYFNGVSLMDRPLVERRKFMRENMVEIPNHILFSEMK
HVTKASDLADMITRVIREGLEGLVLKDLKSMYEPGKRHWLKVKKDYLNEGAMADTADLAV
LGAFYGKGANGGMMSIFLMGCYDTESGKWCTVTKCSGGYDDATLARLQKELEMVKISKDP
SKIPSWLKINKNYYPDFIIRDPENAPIWEITGAEFSKAEAHTAGGISIRFPRCTRFRDDK
DWKTATTLQQLKELYQISKEKCDFTVTATSSQDEEGSSESSSRDNEANSRPPTPSGSVKK
PKSSSSKSPGKDKRNDSGKLSQPKKSDEPAKAEKRKIVSPVSVDSKKVKLSSASNGNGHN
VAQPSATAKTLLDIFTGVRLYLPASLEEFSKLRRYFIAYDGDLVPEFDAPSATHVMGDIP
ECAEDAKHVTPRWIWECIRRRRLVAPC
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtttattgaaacttttgattctgcaaacggcaaggatattctcaccactgtca
tcaaggagcttttcgaacactactactcctattctgcgttactcactaagattaccatat
ctcagcaccttacaattcaactttgctataagaaatagaagctgccacagcatggcagag
caacgttactgtgtagaatacgccaagcgcggaactgcaggctgcaagaaatgcaaagaa
aagatagcaaaaggcatggtacgaattggaaaaatagttccaaatccttttagtgaatca
gcaggagatatgaaggagtggtaccatgtcaagtgcatgtttgagaagttggagcgtgca
cgggcaactacaaagaagattgatgacctcaccgagcttgagggttggcaagagctacag
gacgctgaaaaggaaatgattaatcagcatgtaaaagagcttgctgctaaagctggagct
gcaccaacacctcggaaaaagactccttcaaaggcgaatcaacccccgacagcaccaagt
gcatctccatcaacaatgcctgcaccgagcccttcacctttaaagttttctgggttttca
gcaaagcctgaatcctcacattcggcatccagttccagtagtggttcaagtctgtctgca
gcaaaatgtgatccaaaacacaaggactgtctactgcgtgaattccgcaaagtatgtgcc
atggttgcagagcagccaagctataatgccaagacccagatcatccaggatttcctaaca
aaaggaactggtggagatggtttccatggagatacatacttgacagtgaaactgctatta
cccggtgttatcaagagtgtttacaacctcaacgataaacagattgtcaagctctttagt
cgtatattcaactgcaacctagaggaaatggttcgagaccttgagcagggagatgtgtca
gagaccgttcggattttctttgaagagagtaaaaccttctccccagctactaagagtctc
ctgacaattcaagaagtagatgacctgctcaaccagctttctaaaatgaccaaagaagaa
gaccagcagaaagtactggaggacattgcacacagatgtaccagtaatgatctgaagtgc
atcattcggctaataaagcatgatttgaaaatgaatgcaggagctaaacacgtacttgat
gctctcgatcctaatggacatgatgcattcaaagcatcccgcaatttggaagatgtggtg
gaacgtgtgctacaaaaccagcagcaggcaccaggcatgaaacgcacacttagcgtaaag
gctacgctaatgacgcctgttcagcctatgttggctgaggcctgcaaatctgtagagtat
gctatgaagaaatgtccaaatggaatgtatgcagagataaagtatgatggagaacgcgtc
caggtgcacaaaaacggtgatcacttcagctattttagccgtagtctgaagccagttctt
ccccacaaggttgctcatttcaaagactatattcccaaagctttccctggtggcaatagc
ataatcttggactctgaagtgcttcttatcgataccaagaccagcaaaccccttccattt
ggaacgttaggagttcacaagaaagctgctttccaggatgccaatgtatgcctctttgtt
tttgactgcatatattttaatggtgtcagcttaatggacaggccattagttgagagacga
aagtttatgcgtgaaaatatggtggaaatccctaaccatatattgttctcagaaatgaaa
catgtcacgaaagcatcagatttggcagacatgattacccgagtaatcagagaaggttta
gaaggccttgtgctaaaagatttgaagtcaatgtatgagccaggaaagcgtcactggctg
aaggtgaaaaaggattacttgaatgaaggtgctatggcggacactgctgatcttgcagtt
ttgggagcattttatggaaaaggagcaaatggtggtatgatgtctatattccttatggga
tgttatgacacagagagcggcaagtggtgcacagtgacaaaatgctcaggtggttatgat
gatgcaacgcttgcccgtttacaaaaggagctggaaatggtcaagatcagcaaggaccca
tctaaaatcccttcatggctgaaaatcaacaagaactattacccggacttcataatacgg
gatcctgagaatgcccctatctgggagattacaggagcagagttctccaaggcagaggcc
cacacagctggtgggatttctatacgtttcccgcgttgcacccgcttccgagatgacaaa
gattggaaaacagccaccactttacagcagctaaaggagctatatcagatctcaaaagag
aagtgtgatttcactgttacggccacgtcatctcaggatgaggaaggctcttctgagagc
agcagtcgggacaatgaagcaaactctagaccaccaacacctagtggctctgtgaagaaa
ccaaaaagctcaagttctaaatcacctggcaaagataaaagaaatgacagtggcaaactt
tcccaaccaaagaaaagcgatgaaccagctaaagcagagaagaggaaaatcgtatcacca
gtctctgttgatagtaaaaaggtaaaactctccagtgcaagtaatggcaacgggcacaat
gtggcacaaccgtcagccacagccaaaacccttctggatatattcacaggagtgaggctt
tatctgcctgcttctcttgaagaattttcaaaattgcgccgctacttcattgcttatgac
ggtgatctcgtcccagaatttgacgctccttctgccacacatgtgatgggggatattcct
gaatgtgctgaggatgccaagcatgtgacaccacgttggatatgggaatgcattagacgc
agaaggctagtagcaccttgctga
DBGET
integrated database retrieval system
