KEGG   Nanorana parkeri (Xizang Plateau frog): 108795603
Entry
108795603         CDS       T04897                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
npr  Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:npr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108795603 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:npr03041]
    108795603 (SNRNP40)
Spliceosome [BR:npr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    108795603 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    108795603 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_SPT8 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_RIG_1st Beta-prop_Nup120_160 WD40_like Cytochrom_D1 WDR54
Other DBs
NCBI-GeneID: 108795603
NCBI-ProteinID: XP_018422385
LinkDB
Position
Unknown
AA seq 345 aa
MIEQNKRKGMELVAAAAKKPDAAVGYHEPRGGGAAGPPRSSSLQAPIMLLSGHEGEVYCC
KFHPNGLTLASAGFDRLILLWNVYGECDNYATLKGHSGAVMELHYNTDGSYLFSASTDKT
VAIWDCETGERVKRLKGHTSFVNSCYPARRGPQLICTGSDDGTVKLWDFRKKAAVQTFQN
TYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLMYTMRGHSDSVTGLSLSSEGSYLLS
NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSADGSKIAAGSADRFVYVW
DTTFRRILYKLPGHAGSVNEVAFHPDESVVLSASSDKRLYLGEIQ
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgatcgaacagaacaagaggaaggggatggagctggtcgccgcagccgccaagaagccg
gacgcagcggtgggataccacgagccgcgggggggcggagccgctggacctccaagatca
tccagtctccaagcgcctattatgctgttgtccggacacgagggggaagtttactgctgc
aaatttcatcccaatgggcttacattggcttctgcaggatttgaccgactaatccttctg
tggaacgtgtatggggaatgtgataactacgcaaccctaaagggtcatagtggagctgtg
atggaattgcattacaatacagatggcagctatctgttctctgcgtcaactgataaaaca
gtagcaatttgggactgtgaaactggtgagagagtgaagaggctaaagggacacacatca
tttgtaaattcctgttatcctgccaggagaggtccacagctcatctgtacaggcagcgat
gatgggacagtaaagctttgggacttcaggaaaaaggcagccgtgcagactttccaaaac
acatatcaagtattagcggttaccttcaatgacaccagtgaccagattatctcaggaggc
atagataatgacataaaggtttgggatctaagacagaacaagctgatgtacacaatgaga
ggtcacagtgattccgtgacaggcctcagtcttagttctgaaggttcatacttgctctcc
aatgcaatggataatacagtccgtgtatgggatgttcgcccatttgccccaaaagaaaga
tgtgtaaaaatattccaaggaaatgtgcacaattttgaaaagaatctgttgcgttgttcc
tggtctgcagatggcagcaaaatagcagctggatcagcagacaggtttgtgtatgtttgg
gacaccacgttccgcaggattctatataagcttcctggccatgcaggctctgtcaatgaa
gttgcctttcaccctgatgaatcagttgttctgtctgcttccagtgacaaaagactatat
ctgggagaaatccaatga

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