Nanorana parkeri (Xizang Plateau frog): 108795736
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Entry
108795736 CDS
T04897
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108795736
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
npr00536
]
108795736
Glycosaminoglycan binding proteins [BR:
npr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108795736
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108795736
NCBI-ProteinID:
XP_018422525
LinkDB
All DBs
Position
Unknown
AA seq
711 aa
AA seq
DB search
MFWWFATQAVFHSGGLPHRRFATQAVFHSGGLPHRRFATQAVCHTGGLPLRRFATQAVCH
SGGLPHRRFATQAVFHSGGLPHRRFATQASLIGEKGEPAMLEPGTAIEGPIGFPGHPGEP
GPPGPSGPPGPIGDPGERGPPGRPGLNGADGIPGPPGNTVMLPFQYGGDSRGQTVSFQEA
QAQSILQQAKLAMKGPPGPVGLTGRPGPLGPPGSQGPKGDYGDNGPPGPRGFQGIVGPSG
KFGKRGRSGADGGRGMPGETGIKGDRGFDGLPGLPGENGHKGDMGGSGPPGPSGKNGDKG
SPGPSGPAGSPGEAGARGLVGPRGPPGPPGQPGVSGIDGAPGPKGNQGIQGESGPNGQQG
NPGSHGLPGPQGPIGMPGEKGPAGKQGISGLAGSDGPPGHPGREGPAGEKGVLGPPGSPG
PIGYPGSRGVKGAFGVRGLKGSKGEKGEDGFPGSKGDMGLKGDRGDPGTVGGRGEDGPEG
PKGQSGPLGELGALGIFGEKGKLGVPGLPGYPGRQGAKGSTGFPGSVGVVGEKGKRPVKE
EADSPDHRDSGDPPAREVNEVRVGQLESLDSREIPVMMVLLDLLERRDQWVPRGHLDSQD
PKDPLDLQGRTGYLDMPAHEESQVFKAKQAFQDQPGLLGLRANQGRLVQWENEVNRGHQD
LQENMDCQARQDGKELREIPVLLAMQVNLDLKGFEGFQVREEFLGSRVQLG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttctggtggtttgccactcaggcggttttccactcaggcggtttgccacacaggcgg
tttgccactcaggcggttttccactcaggcggtttgccacacaggcggtttgccactcag
gcggtttgccacacaggtggtttgccactcaggcggtttgccacacaggcggtttgccac
tcaggcggtttgccccacaggcggtttgccactcaggcggttttccactcaggcggtttg
ccacacaggcggtttgccactcaggcgagcttgataggagagaaaggagaacctgccatg
ttggagcctggcaccgcgattgagggtccaataggattccctgggcacccgggagaacca
ggaccgcctggaccttcaggacctcctggaccgattggggatccaggtgaaaggggtcct
ccaggaagacctggactcaatggtgccgatggtatacctggacctccggggaatacagtg
atgcttcctttccagtatggtggcgattccaggggacagactgtgtcgtttcaggaagct
caggcacaatccatcttgcagcaggctaagctggctatgaaaggtccgcctggcccggtg
ggtctgacaggacggcccggtcccctcggtcctcccgggtcgcaaggtccaaagggtgac
tatggagacaatggtcctccgggtccgcgtggcttccaaggcatcgtgggtccctcagga
aagttcgggaaaagaggacgcagcggagcagacggcgggcgcggtatgccgggagaaacc
ggaattaagggagaccgtggatttgatggcttgccaggacttccaggagagaacggccac
aaaggagatatggggggctcgggcccgcctgggccatctggaaaaaatggagacaagggt
tctcccggaccttccgggcccgctggttctcccggagaagctggtgcacggggcttggtt
ggtcctcgaggtccccctggcccaccaggtcagccaggtgtaagcggaattgatggcgct
ccaggtccaaaaggaaaccaaggcattcaaggagagagtggaccaaatggacaacaagga
aacccaggatctcatggtttacctggacctcagggtcccattggaatgccaggggagaag
gggccagcgggaaagcaaggcatatctgggttggctggatctgatggccctccgggacat
ccgggaagagaggggcctgctggagagaagggcgtcctgggtcccccgggctcacctggt
cctataggatatcccggctctcgaggagtgaagggagccttcggcgttagaggactgaag
gggagcaaaggagaaaagggtgaagatggttttcccggctccaaaggagatatggggctc
aaaggagacagaggggatccaggaactgtaggaggacgcggagaggatggtcctgaaggg
ccgaaagggcagtctggaccgctgggagagctgggagcactgggaatttttggagaaaag
ggaaagctaggagttccgggactcccgggatatccaggacgtcaaggtgcgaagggttcc
acaggatttcctggttcagttggcgtggttggagaaaaaggcaagaggcctgtgaaggaa
gaagcggacagcccggatcaccgggacagcggggaccctccggcacgagaggtgaacgag
gtcagagtgggccaactggaaagcctggactcaagggagattccggtaatgatggtgttg
ctggatctgctggagagaagggaccaatgggtgccccggggccacttggattcgcaggac
ccaaaggacccactggaccttcagggaaggacgggttacctggacatgccggcacacgag
gagagccaggttttcaaggcaaaacaggccttccaggaccaaccggggttgttgggcctc
agggcaaatcaggggagactggtccaatgggagaacgaggtcaaccggggtcaccaggat
ctccaggagaacatggattgccaggcccggcaggacgggaaggagctaagggagatcccg
gtccttctggcaatgcaggtaaatctggacctcaagggcttcgagggtttccaggtgcga
gaggaatttctggggagcagggtccagctgggttaa
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