Nanorana parkeri (Xizang Plateau frog): 108795854
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Entry
108795854 CDS
T04897
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
npr03009
]
108795854 (IGHMBP2)
03012 Translation factors [BR:
npr03012
]
108795854 (IGHMBP2)
Enzymes [BR:
npr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108795854 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
108795854 (IGHMBP2)
Ribosome biogenesis [BR:
npr03009
]
Eukaryotic type
Other ribosome biogenesis factors
108795854 (IGHMBP2)
Translation factors [BR:
npr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108795854 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
SMUBP-2_HCS1_1B
AAA_12
AAA_30
AAA_19
Helicase_RecD
ResIII
nSTAND3
DEAD
Viral_helicase1
AAA_16
AAA_22
UvrD-helicase
IstB_IS21
SLFN-g3_helicase
AAA_25
Zot
Flavi_DEAD
DnaB_C
AAA
PhoH
ATPase
ABC_tran
AAA_18
NTPase_1
AAA_31
NPHP3_N
DAP3
AAA_33
FtsK_SpoIIIE
cobW
SRP54
CbiA
Motif
Other DBs
NCBI-GeneID:
108795854
NCBI-ProteinID:
XP_018422671
LinkDB
All DBs
Position
Unknown
AA seq
594 aa
AA seq
DB search
MEEFVKTQLELLKEEREAEIEEARTWRENVSLKELQRKGVCLLKLQVANQKTGLYGRLLV
TFTPRKYDAEAVLPSNSFGSGDIVGVYESISPNEPLATGIVSGVTQKVINVAFDDTHSEA
LNLGSDSTYRLLKLANDVTYKRIKKALTTLNQYHTGPATSIIDVLFGSSEPSSAGLSRPV
EFLNPSLDDSQKEAVVFSLNQREVAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN
VAVDNIVERLAAYKERILRLGHPARLLESLQHHSLDAVLARSDNAQIVADIRKDIDLTFA
KMRKLRKEEKGGFRTEMKALRRELKEREEAAMIETLKAANVILSTNTGASPAGPLKLLPD
NYFDLVVIDECAQAIEASCWIALLQARKCILAGDHKQLPPTIISHKAASRGLSLSLMERI
IKKYGDRVVKMLTVQYRMNDCIMQWASQALYENRLTAHSSVARHLLKDLPGVALTEETSI
PLLLIDTAHCGLFEMDIEDEQSKGNPGEVRLVDLHIKALTSAGLKARDIAVISPYNLQVD
LLRQCLRHRYPDLEIKSVDGFQGREKEAVILSCVRSNSKGQWTIHEQSTSFDSL
NT seq
1783 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtttgttaagacccagcttgagctcctgaaggaagagagagaagctgaaatt
gaagaggcgaggacctggcgggaaaatgtctccttaaaagaattacagaggaagggagtc
tgtctgctgaagctgcaggtagcaaaccaaaaaacagggctgtacggacgccttctggta
accttcacacccaggaagtatgacgctgaagcagtgctgccgagtaacagcttcggatca
ggggacattgtgggtgtttatgaatccatcagcccgaatgagcctcttgctaccggcatt
gtgtctggtgtcacacagaaagttatcaatgtagcctttgatgacactcatagtgaggcc
ttaaatctgggaagtgatagtacatacaggcttctgaagttggcaaatgacgttacttac
aaaaggataaaaaaggctttgaccacactgaatcagtaccacacaggacctgcaacttcc
atcatagatgttcttttcggatcatctgaaccaagcagtgctgggttgtcaaggcctgtg
gaatttctcaatccgtctttggatgattcacagaaggaggcagttgttttttctttaaac
cagagagaagttgcaattattcacggcccccctggtactggtaaaacgacaacggtggta
gaaatcatcctccaagctgtgaagcaagggctaaaggtcctttgctgcgctccttccaat
gtagccgtggacaatatagtagagcgcctggctgcttacaaagagcggatattacgtttg
gggcatcctgcacgtcttctggaatccttgcagcaccactctctggacgctgtgttggca
cgtagtgataacgctcagattgttgctgacatccgcaaagatatcgatctgacgtttgca
aaaatgagaaaactgcgcaaggaagaaaaaggtggcttcagaacagaaatgaaagctctt
aggagagaactgaaagaacgcgaggaggcagccatgatcgaaacgttaaaagccgccaat
gttatcctcagtacaaacacaggtgcttccccggccggccctctgaaactgcttcctgat
aattactttgacctggtggtgattgatgagtgcgctcaggcgatagaagccagctgctgg
atcgctctactgcaggcgagaaagtgtatcttggccggagatcacaaacagctaccaccc
accatcatatctcacaaggctgcatcaaggggcctgtccctcagcttgatggagcggata
ataaagaagtatggggacagagtggtgaagatgctgaccgtgcaatatcgtatgaatgac
tgtataatgcagtgggcttcacaagcattgtatgaaaacaggctgactgcacactcctct
gtcgcacgccatttactcaaagacctacctggagtggcattaactgaggagaccagtata
ccattactacttatagacacggcacactgtggactgtttgagatggatattgaagatgag
cagtcaaaagggaatccaggcgaggtgcggttggtggatttacacattaaggcgctgact
agtgctggtttgaaagctcgggatattgctgtaatatccccctacaacctgcaggtggat
ttgctacgccagtgtctgcggcacaggtacccagatcttgaaattaagtctgtggatggt
tttcaaggaagagaaaaggaagccgttatattgtcctgtgtaagatccaattctaaaggt
cagtggactatacatgaacagtccacgtcttttgacagtctct
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