Nanorana parkeri (Xizang Plateau frog): 108796189
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Entry
108796189 CDS
T04897
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B
KO
K12821
pre-mRNA-processing factor 40
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108796189 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npr03041
]
108796189 (PRPF40B)
Spliceosome [BR:
npr03041
]
Complex A
U1 snRNP components
U1 related factors
108796189 (PRPF40B)
Complex B
108796189 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Glyco_hyd_101C
WW_2
DUF4936
DTW
LUD_dom
Motif
Other DBs
NCBI-GeneID:
108796189
NCBI-ProteinID:
XP_018423130
LinkDB
All DBs
Position
Unknown
AA seq
906 aa
AA seq
DB search
MSAPDSGTAPPGQSASFPTAPPLMPPPFMPPPGLPPPFPPIGLPPVGQRPPTMPPIPHAM
MPPMIPPMAGPPPLAQLPNLVPPLMPTMMLPAVTTTASSMMPKMPVDDKSPSQDIPKKKS
LWTEHKSPDGRTYYYNTETKQSTWEKPDELKSKTELLLSQCTWKEYKSDTGKPYYYNSQT
KESRWTKPKDLEELEVLIKQEEEAGIDHESQSAASSPHSTAHSSDAEITPTEELRVTQPS
VPEPTDNPDIEAIQEDTTVYQTEITNSDSLQLEDGNQVEPEKTMYHWNTKEEAKQLFKEL
LKDKGVPSNSSWEQAMKMIINDPRYSALPKLSEKKQTFNAYKSQREKEEKEEARLRAKEA
KERLQHFLEQHDKMTSATRYRKAEQMFGDQEVWSVVPERDRKEIYDDVLFFLAKKEKEQA
KQLRKRNVQALKNILDNMSNVSFQTTWSEAQQYLMDNPMFAEDEELQNMDKEDALICFEE
HIRALEKDEAEDKEKSRLRERRQQRKNRESFQVFLDELHETGQLHSMSTWMELYPFVSTD
SRFANMLGQTGSTPLDLFKFYVEDLKARFHDEKKIIKDILKDRNFSVEVNTTFEDFAHII
SFDKRAATLDAGNIKLTFNSLLEKAEARERERGKEEARKFRRKEAAFKSMLKQAAPPLEV
DSSWDDVRERFAGDSSFNQITVESERIRLFKEFLLSIENECQHHHFKGKKHSKKSKKHHR
KRSHSQSPSPAERMKKTLDPFNAWDNAGTVEKVRTYYGAMPLHDLKVSETDEENNQQRPQ
KRKRRNHSESGSDISSSIDSEHSTKKSKRQKKKSKKKRHKSNSPESEAEREKEKNKRERD
QEVEQLKERAKDRDQDQEETADGHRRSLKQASRNEKTGWDTSESELSEGELEKRRRTLLQ
QLDDDQ
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaccagactcaggaacagctccacctggccagtctgcatcttttcctactgct
cctcccctgatgcctccaccttttatgcctccccctgggcttccacctccatttccacca
attggtttgccaccagttggacagaggccccctacaatgcccccaattccacatgcgatg
atgccgccaatgatccctcctatggcaggaccaccacctcttgctcagcttccaaacctg
gtgccgccattaatgccaaccatgatgctaccagcagtaacaactacagcctcttccatg
atgccaaagatgcctgtggatgacaagtcaccctctcaggacattccaaaaaagaaatcc
ctgtggaccgagcacaaatcaccggatggacgaacctattactacaacacagaaaccaag
caatccacttgggagaagccagatgagctgaagtctaaaacagagcttctcttgtcacaa
tgtacctggaaggaatataaatcggatacaggcaaaccctattattataactctcagacc
aaggaatcacgctggaccaagcccaaagatttagaggaattggaggttttgataaaacaa
gaggaagaagccggaattgaccatgagagtcagtctgctgcatccagtcctcattctaca
gcacattcatctgatgctgaaattacacctacagaggagttaagagtcacgcagcccagt
gtgcctgaacccaccgacaaccctgacatagaagctattcaggaagacacaacagtttac
cagacagagatcactaatagcgattctttacaattggaggatggaaaccaggtagaacct
gagaaaacaatgtatcactggaacacaaaggaagaagcaaagcaactgtttaaggaacta
cttaaagataagggggttccttctaattcatcatgggaacaagcaatgaaaatgattata
aatgatccccgctacagtgcactacccaagctgagcgagaagaagcagacattcaatgct
tacaaatcacagcgtgaaaaggaagaaaaggaggaggcaagacttagagctaaagaagca
aaagagaggctacagcacttcctagagcaacatgacaagatgacctcagccactcgctac
aggaaagctgaacagatgtttggtgatcaagaagtgtggtctgttgttccagagcgagat
cgtaaagaaatttatgatgatgttctcttctttctagcaaaaaaagaaaaggaacaggca
aagcagttaaggaaacgcaatgttcaagcactgaagaatattttagataatatgagcaat
gtcagcttccaaaccacgtggtccgaagcccagcagtatctcatggataatcccatgttt
gcagaggatgaagagctgcagaatatggataaagaagatgcccttatctgctttgaggag
cacattagagctctggagaaagatgaggcagaagacaaagagaaaagccgccttcgtgaa
aggcgccagcagcgcaaaaatcgagaatctttccaggtgtttcttgatgagcttcatgag
actggtcagctgcactccatgtcaacgtggatggaactctacccttttgtcagcactgac
tcacgttttgctaacatgctaggacagacaggctctacccctctcgatctgttcaagttt
tatgtggaagatctgaaggctcgattccatgatgaaaaaaagatcattaaagatattttg
aaggaccgtaacttcagtgtagaagtgaacactacatttgaagactttgctcacattatc
agttttgacaagcgagcggccacacttgatgcaggaaacattaagctaacatttaatagc
ttgctggagaaagccgaagctcgggagcgtgagcgaggaaaggaggaagctcgcaagttt
cgaaggaaggaagctgcatttaaaagcatgctgaagcaggcggctcctcctcttgaagta
gacagcagctgggatgatgtccgagagcgctttgctggagacagttctttcaatcaaatc
acagtggaatcagaaagaatccgcctatttaaggagtttcttttatctattgagaatgaa
tgtcaacatcatcacttcaaaggaaagaagcactcaaaaaagtccaagaaacaccaccgt
aagcgctctcactcccaatcacctagccctgcagaaaggatgaagaagactttggaccca
ttcaatgcatgggacaatgctgggactgtggagaaggtgagaacctactatggagctatg
cctttacatgacttaaaggtttctgaaactgatgaagaaaataatcagcaacgaccacag
aaaagaaaaaggagaaaccattcggagtcgggatctgacatttcatcatcaattgattca
gaacacagcaccaagaaatctaagagacagaagaagaagagtaagaagaaaaggcacaaa
tcgaacagtcctgaaagtgaagccgagagggagaaggaaaaaaacaagagagaaagagat
caggaggtcgagcaactgaaagagagagcaaaagacagagaccaagatcaggaggagact
gcagacggtcatcgcagatcattaaagcaagcctcaagaaatgagaaaacaggctgggac
acatcagagagtgagctcagtgaaggagagctggagaagagacgacggacattactacaa
cagttggacgatgatcagtag
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