Nanorana parkeri (Xizang Plateau frog): 108796617
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Entry
108796617 CDS
T04897
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
108796617 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
npr01009
]
108796617 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
npr04515
]
108796617 (PCDH1)
Protein phosphatases and associated proteins [BR:
npr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108796617 (PCDH1)
Cell adhesion molecules [BR:
npr04515
]
Cadherins
Protocadherins
108796617 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
SLC3A2_N
EphA2_TM
DUF6377
MAP17
He_PIG
Motif
Other DBs
NCBI-GeneID:
108796617
NCBI-ProteinID:
XP_018423617
LinkDB
All DBs
Position
Unknown
AA seq
1232 aa
AA seq
DB search
MRSRQSGEGGGGWSKAGETEWPHSLKPRMKKAASCFYLWLFFQLPLIGSSTQVKYKVEEE
QPPNVLIGSLAVDYGYPDSKHLYKLELGHPYLRVNGNSGDIYTTETAIDRESLRECQNLF
PGQPCFLEFEVSMTDLMSPVPKLLDGQIEVLDINDNTPNFASPVLMLSIPENTNIGMLFP
IPAATDRDSGVNGVASYELIVGPEAHELFGLQVAEDQDEKQPQLIVMGNLDREQRDSYDL
TIKVQDGGNTPRASSALLRISILDTNDNAPKFEKMAYEAALPENSPMGHSVLQVKANDSD
QGANAEIDYSFHQASDTVRRLLHLDRATGLITVQGPIDREDVGTLRFSVVAKDKGSNPKS
ARTQVTITIRDTNDNKPVIDIRGFGLVTHQDGVANISEDVPVETPVALVQVSDIDEGENA
AVTCVVARDVPFQLKQVSDTGTDSKKKYFLQTTTPLDYESIKEYTIEIVAVDSGNPPLSS
TNSLKVQVTDVNDNAPIFPQSLMEVTFKENNSPDDIVMEVSATDADSGSNAQISYSILAD
ASTRAIFSINPDSGQIRVNTVLDREQREHYDFHVVAADKGTPSLKGTASVVITILDCNDN
DPKFMLNGYNFSVMENMPRLSPVGMVTVIDADKGENARIHLSVEPDSGEFIIQNGTGTIL
SSISFDREHQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPVIVVPSNISYAYLTP
STHPGTQVNKVRAEDMDTGINAELVYSIASGNPYELFQITPTGGEVTLEKQILRKHHGLH
RLVVRVSDRGKPTRHGTALVHFYINDTLTNQTFVETLLGHSQDTPLNIDIAGDPEYEHNK
QQRIVLFGVFAGIVAVVVVIVVVVLARYCRQKEAKSGYQAGKKETKDLYAPKQSNKNNKN
KIKAKKSKSPKPPKPVEEDEETGLQKSLKFNLMSDSVGDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPAANTFVGTGDNTSTGSDQYSDYSYRTNPQKY
NQKQLPHRRVTFSTSNQAPDIQDPSQQSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPETDLRPLPDVAMTGNCTRECTEYGHSDTCWMPGQPSPTRRPKNAL
KLSTFVPYQDKGSQEQIGNGNPRIPEDRIGGNNNSTTKMANIQLLPTYSAFTSNSHESCS
DSPLEEIPLTQTADFQHATTPSSQSAKREIYL
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgaggagccggcagagcggagaagggggaggcggctggagcaaagctggggagacagag
tggccacactcgctaaaaccaaggatgaagaaggcagcatcttgcttctacctatggctt
ttctttcaacttccccttattggatcttccacccaggtgaaatacaaggtagaggaagag
cagccccctaacgtcttgattggaagcttggctgtggactatggatacccagactcgaag
cacctgtacaagctggaattggggcatccttacctcagagtgaatggcaattctggagac
atctatacaactgagacggccattgaccgagagagcctgcgtgagtgccagaacttgttc
ccaggccagccatgcttcttggagtttgaggtgtctatgacggacctgatgtccccagtt
cccaagcttctcgatggtcagattgaggttttggacataaatgataacactcctaatttt
gcttctccggtcctcatgctgtccattccagagaacacgaatatcggaatgctgtttcca
atccctgctgctactgaccgggattctggagtcaacggggtggcatcctatgagctgatt
gtgggccctgaggcacatgaactttttggactgcaggtagccgaggaccaagatgagaaa
caacctcagctcattgtcatgggaaatctcgaccgagagcaaagagactcttatgatctc
acaattaaagttcaagatggtggcaacaccccacgagctagcagtgccctactgcgcatc
tccatcctggacaccaacgacaacgctcccaaatttgaaaagatggcttacgaggcagcg
ctgcctgagaacagcccaatggggcactccgtactccaggtgaaagccaacgactctgac
caaggtgccaatgctgagattgattattcttttcaccaggcctcagataccgttcggcgg
ctcctgcacttagatagggcaacaggtttgattacagttcagggtcccatagatcgtgaa
gatgttggaactctacgcttctcggtggtggctaaggacaaaggatcgaatccaaaatct
gcacgtacccaagttacaatcaccatccgtgacacgaatgacaacaagccagtaattgac
atcaggggattcggtctggtaacacaccaggatggcgtggcaaatatttcggaagatgtc
ccagtggaaacacctgtggctttggtacaggtctctgatatagatgagggtgaaaatgct
gctgtgacctgtgttgtggccagggatgttcctttccagttgaaacaggtcagcgacaca
ggtactgacagcaaaaagaagtacttcctacaaaccaccaccccgctggactatgagtct
attaaagaatatactatcgaaattgtagctgttgactctggtaaccctcctctttccagt
accaactcccttaaggtgcaagtgactgatgtgaatgacaatgcacctatcttcccccag
agtctgatggaggtgactttcaaagagaacaactctcctgatgatattgtaatggaagtt
agtgcaactgatgctgatagtggttcaaacgctcagatatcctactccattcttgccgac
gccagtacccgtgcaatcttttccatcaacccagactctggtcaaattagagttaacacc
gtgttagatcgggagcagagagaacattatgactttcatgttgttgctgcagataaggga
acccccagtctaaaggggacagcttctgttgtcatcactattctggactgtaatgacaat
gatccaaagttcatgctaaatggctacaacttctcagtaatggagaacatgcctaggttg
agcccagtcggaatggtcacagttattgatgcagataagggtgaaaatgctcgtatccat
ctctcagtggagcctgacagtggtgaatttattatccagaatggaacgggcactatcctt
tccagcatctcctttgaccgggagcaccagagcacatacaccttccggttaaaggcagtg
gatggaggggacccacctcgttctgcatatgtcggtgtgactattaatgtccttgatgag
aatgacaatgctccagttatagttgtaccgtcaaacatttcatatgcttatcttactcct
tctactcacccaggtacccaggtcaacaaggtgcgagctgaagacatggacacgggtatc
aatgctgaacttgtatatagtattgctagtggcaatccctatgaactttttcaaataact
cccacaggaggtgaagtaaccctagaaaagcagattttaaggaagcaccatggcctgcac
cgtctagtagtaagagtgagtgatcgaggaaaacctaccagacacggcacagccttagtc
cacttctatatcaatgatactttgacaaaccagacctttgtggaaactctacttggtcac
agtcaggatactccattgaacattgatattgctggggatcctgaatacgagcataacaaa
cagcaaagaatcgtcctatttggtgtgtttgctgggattgtggcagttgtcgtggtcatt
gtggtggtggttttggcccgatactgcagacagaaggaagccaagagtggctatcaggcc
ggcaagaaagaaacaaaagatctgtatgccccaaagcagagtaataaaaacaataaaaat
aaaatcaaggcaaagaagagcaaatctcccaagccacccaaaccagtagaggaggatgag
gaaacggggctgcagaagtccctcaaatttaatctgatgagtgactctgttggtgacagc
ccaaggattcatctgcccttgaattacccacctgggagcccagatttggggcgccattac
cgctcaaactcccctctgccatccatccagctgcagccacagtccccatctgcctccaag
aagcaccaggtggtacaagacctaccggctgccaacaccttcgttggcactggggacaac
acatccactggctctgatcagtactcggattacagctatcggaccaatccccagaaatac
aaccaaaagcagttacctcatcgccgagtgacgttctctacatccaaccaggcaccagac
atccaggacccttctcagcaaagctactacgacagcggcctagaggaatcggagacccca
agcagcaagtcatcctctgggccaagaatagggcctttggctctcccagaagatcactat
gagagaactacccctgatggcagcatcggtgagatggaacatcctgaaactgatctcaga
ccactgcctgatgtagccatgacgggaaactgcacacgggaatgtacagaatatggacac
tctgacacttgctggatgcctggccagccatcacccactcgcaggcccaagaatgccctc
aagctctccacttttgtgccttaccaagacaaggggagtcaagagcaaattggcaatggc
aaccctagaattccagaggaccgcatcggaggcaacaataacagcaccaccaaaatggct
aacattcagctgttaccgacttatagtgcctttaccagtaacagccatgagtcatgttcg
gactcccctttggaggaaatcccactaacccaaacggctgatttccagcacgccaccact
ccttcatcccaatctgccaagcgggagatatatctgtga
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