Nanorana parkeri (Xizang Plateau frog): 108796692
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Entry
108796692 CDS
T04897
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108796692 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108796692 (SKIV2L2)
03041 Spliceosome [BR:
npr03041
]
108796692 (SKIV2L2)
03009 Ribosome biogenesis [BR:
npr03009
]
108796692 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
npr03016
]
108796692 (SKIV2L2)
Enzymes [BR:
npr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108796692 (SKIV2L2)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108796692 (SKIV2L2)
Spliceosome [BR:
npr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108796692 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
108796692 (SKIV2L2)
Ribosome biogenesis [BR:
npr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108796692 (SKIV2L2)
Transfer RNA biogenesis [BR:
npr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108796692 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
108796692
NCBI-ProteinID:
XP_018423693
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFDEESPAASKTAQPVPATSTAGARGKRNAKPQAAVARPPSVTKRDVGS
LDGPEECILGKKLKLDTTAADELNLADLMPRIKVQEVDTVEGCTHEVALPADEEYMPLKP
RVGKASKEYPFILDAFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFNDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENSDFREDNFNTAMQVLRDVGEASKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMSKLDFNSDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTV
GKQLLKGTADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVAEKVKR
LEEQYNGIQIPNEESVVTYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKREEE
DFGWGVVVNFSRKSNVKPNTGDLDPIYVVEVLLNCSKESLKNAATEAAKPAMPDEKGEMQ
VVPVLLHLLTAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKD
PGLKKVVQKTEAFEHRMYSHPLNNDPNLETAYKLCEKKAQIAVDIRGAKRELKKARTVLQ
MDELKCRKRVLRRMGFANSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQETARRIAKVSAEAKLEVDEETYLGSFRPNLM
DVIYTWANGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggtgacgacctgttcagtgtgtttgatgaggagagtccggcggcc
agtaagactgcgcagcccgtcccggccacctccactgcgggggccagagggaagagaaat
gcgaagcctcaagcagcagttgcaagaccgccttcggtgacaaagcgagatgtcggctct
ctggatggaccggaggaatgtatattggggaagaagctgaagcttgatacaacagctgcg
gatgagttgaatcttgcagatctaatgccgaggataaaagtgcaggaagtagatacagtt
gaaggttgcacacatgaggtggcactgcctgctgatgaagagtacatgcctcttaaaccg
cgggttgggaaagcttcaaaggaatatccgttcatactggatgcatttcagagggaggcc
attctgtgtattgataacaaccagtccgttctcgtgtctgctcatacatcagctggaaaa
acagtgtgtgcagagtatgctatagctttagctctaagagaaaagcagagagtcattttt
accagtcccatcaaagctctaagtaaccagaaatacagagagatgtacgaagaattcaat
gatgttggattaatgactggagatgtaacaatcaaccccaccgcttcttgccttgtgatg
acaactgagatcctgcgaagcatgttgtatagaggctcagaagtcatgagagaggttgcc
tgggtcatatttgatgaaattcactacatgagagattcagaaagaggagtagtgtgggaa
gaaacgatcatccttctaccagacaatgtgcattatgtctttctgtctgccaccataccc
aatgcccgccagtttgctgaatggatctgccacctgcacaaacagccttgtcacgtcatc
tacacagactatcgtccgacccccttacagcattatatatttccagcagggggcgatggc
cttcacctcgttgtggatgaaaatagtgactttcgggaagataacttcaacacagcaatg
caggtgctgagggatgtcggggaggcatctaagggagatcagaaagggcgcaaaggaggt
acaaaaggaccctctaatgtattcaagattgtcaaaatgatcatggagcgcaacttccag
ccggttattatcttcagctttagtaagaaggattgtgaggcctacgcgctgcaaatgtcc
aagctggatttcaactctgatgaggagaagaagatggtggaggaagtgtttaataatgcc
atagactgtctctcggatgaagacaagaagcttccacaggtggaacatgtccttcctctt
ttgaagcgaggtattgggatccatcacggaggattgctgcccatattgaaagagacaata
gaaatccttttctctgaaggtctgataaaggctttgtttgcaacagaaacctttgccatg
ggtataaacatgccagccaggactgtgttattcaccagtgcacggaagtttgatgggaaa
gatttccgatggatctcatcgggcgagtacattcagatgtctggccgagcaggaagacgt
ggcatggatgaaaggggaattgtaattcttatggttgatgagaaaatgagcccaacggtt
ggcaaacagctactaaagggcacagctgatcctctaaacagtgctttccatcttacctac
aacatggtgctgaacctcctgcgagtggaagaaattaaccctgagtacatgttggagaaa
tccttttaccagtttcagcattaccgggctattccaggagtagctgagaaggtgaagagg
ttagaggagcagtataacggtatacagatccccaatgaagagagtgttgtgacgtattac
aaaattcgtcagcagctcgccaagcttggcaaagaaattgaagaatacattcacaaaccc
aagtactgcctgccttttctgcagccaggcagactggttaaggtgaagagagaagaggaa
gactttggatggggagtggtggtaaatttttctaggaaatcaaatgtaaagccaaacact
ggagacctggatcctatctatgtggtggaagttttgctaaactgcagtaaagaaagtctt
aaaaatgctgcgacggaggccgcaaagccagcaatgccggatgaaaaaggagagatgcag
gtagttccagtccttctgcatttgctgacagcaatcagtagtgttcgcctatatattcca
aaggatcttcggcctctggataacagacagagtgtgcttaagtctatccaggaggttcag
aagcgcttccctgatggagtacctttgctggatcctattgatgatatgggtattaaagat
cctgggttgaaaaaggtggttcagaaaacagaagcatttgagcaccgaatgtattcacac
cctctgaataatgaccctaatctggagactgcatacaaactatgtgagaagaaagcacag
attgcagtagatatcagaggcgcgaagcgggagttaaagaaggctcgcaccgtgttacag
atggatgagctgaaatgtcgtaagcgagtgctcaggcgtatgggttttgccaactcctct
gatgtcatagaaatgaaagggcgagttgcatgtgagatcagcagtgctgatgagctcctc
ctcaccgagatgatgtttaatggcctctttaatgacttgacggcggaacaagctactgca
ttgctcagctgctttgtgttccaggaaaattccagcgaaatgcccaaactaacagaacaa
ctggcaggaccacttcggcaaatgcaggaaacggcccggaggattgccaaagtgtcggcc
gaagctaaactagaagtggatgaagaaacatatttagggtcattccgccccaacctcatg
gatgtcatctacacttgggccaatggcgcaacatttgcccagatctgtaaaatgacggat
gtgtttgaaggtagtattatccgttgcatgaggcgtcttgaagaattgttgcggcagatg
tgtcaggcagccaaagccatcggaaacacagaactggagaacaagtttgcagaaggtatt
acgaaaatcaagagggatattgtatttgctgccagcttgtatttgtag
DBGET
integrated database retrieval system
