Nanorana parkeri (Xizang Plateau frog): 108796813
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Entry
108796813 CDS
T04897
Name
(RefSeq) collagen alpha-1(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108796813
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
npr00536
]
108796813
Glycosaminoglycan binding proteins [BR:
npr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108796813
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
108796813
NCBI-ProteinID:
XP_018423847
LinkDB
All DBs
Position
Unknown
AA seq
1844 aa
AA seq
DB search
MSMDTHTRWKRRSWRRDLSLLVALSFICSQCHAGEPADVLKVLDFPNLPDGVQKSTGFCA
FRKSTKGPDVAYRVSKSAQLSAPTKQLFPDTPFPQDFSILTTVKAKKGSQSFLMSIYNEH
GIQQVGMELGRSPVFLFEDHLGNPLPEDYPLFSNINLSDGKWHRIGISVHKKQVTLFVDC
KKRAQKHLERSEHSIVDTNGIVVFGTRILDEDFFEGDIQQLLIVPDHRAAFDYCEHYSPD
CDTAVPDTPQSQDPNQDEYQYPEAAEGDEGYYYEYPYYEEENDKAPTVKPTPATGEEAIR
PQPDFEEDTTVPTEAPAVTTEAARVKIEESEGNPGPTTYDYNYGVHEDYYSPQPYEDTNY
SEVDEKEERTNVDEESIDRTAEVITSTVTATNNGTLVSGVGSSRQDGNVDSDFAEETIDT
YDDSFTDQEEYGIGDLNESAVIVPEYEISGGARGEKGQKGEPAIIEPGMLVEGPPGPEGP
AGYSGPPGTTGPPGPSGDPGERGPTGRPGLPGADGLPGPPGTMLMLPFRFSGGGDGSSKG
PQVSAQESQAQAILQQARLALRGPSGPMGLTGRPGPMGSPGPSGLKGESGDLGPQGPRGS
QGPPGPSGKPGRRGRAGSDGARGMPGQTGTKGDRGFDGLAGLPGEKGHRGESGPSGPPGP
PGEDGERGDDGDVGPRGLPGEPGPRGLLGPKGPPGPPGPHGVAGMDGPVGIKGSVGPQGE
PGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKSGLPGMPGADGPAGHPGKEGPPGEKGT
LGPSGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGPKGDRGEIGASGP
RGEDGPEGPKGRGGPNGETGPLGLAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFQGANGE
KGTRGTPGKPGPRGQRGPTGPRGERGPRGTTGKPGPKGNSGGDGPAGPPGERGPPGPQGP
TGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGH
PGPPGPPGEQGLPGLAGKEGSKGDPGPAGVPGKDGPPGLRGFTGERGLPGPLGSPGLKGS
EGPPGPPGPAGSPGERGAAGPAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGI
QGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGNKADKGEQGPPGPAGPQGPIGQPGPSGA
DGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGP
RGPSGSAGADGPQGPPGGVGNPGSSGEKGDPGESGEPGLPGELGPPGPKGERGEKGEAGL
QGTAGPAGPKGPPGDDGPKGSPGPVGFPGDPGPPGEHGPSGQDGPPGDKGDDGESGQPGS
PGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGESGLEGPSGKTGPVGPQGPPGKPGP
EGLRGIPGPVGEQGLPGSTGADGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGE
QGEKGDRGLPGPQGTHGPKGEQGIFGPSGPVGPPGPPGLPGGPGPKGAKGSSGPTGPKGE
MGIPGPPGPPGPPGEVIQPLPVQSSKRTKRNIDASQVVDEGNTDTNYMDYADGMEEIFGS
LNSLKLEIEQMKHPLGTQGNPARTCKDLQLCHPDFPDGEYWIDPNQGCSRDSFKVYCNFT
AGGESCIFPDKKSEGARLTSWPKENPGSWFSEFKRGKLLSYVDSDGNPIGVVQMTFLRLL
SAAARQNVTYNCYQSVAWHDASSDSYDKAIRFLGSNDEEMSYDNNPYIIAIMDGCASKKG
HQKTILELNTPKVEQAPIVDLMFNDFGDPTQKFGFEVGPVCFQG
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atgagcatggatacccatacgaggtggaaacggagaagttggaggagagacctgtccctt
cttgtagctctaagctttatatgttcccagtgtcatgcaggtgaaccagctgatgttttg
aaggttttagattttcctaatttacctgatggagtccaaaaatcaacaggattctgcgca
ttcagaaaatcgacaaagggacccgatgtggcatacagagtgtcgaagagtgcgcagctt
agtgcccccaccaagcagctcttcccagataccccattcccgcaagatttctctattttg
acaactgtgaaagccaaaaagggaagccagtcattccttatgtccatttacaatgaacac
ggcatccagcaggttggcatggagctgggcagatcacccgtctttctattcgaggatcac
ttgggaaatccactccccgaggattaccccctcttcagtaacattaatctctccgatgga
aagtggcatcggattgggatcagcgtccacaagaagcaagtcaccctctttgtggactgt
aagaagcgggcgcagaaacacctggagcgcagcgagcactctatcgtggacaccaatggc
atagtggtgttcggcaccaggatcctagacgaagacttctttgagggggacattcagcaa
ctcctcatcgtcccagaccatcgagctgccttcgattattgtgaacactacagtcccgac
tgtgacacggctgtccctgacaccccccagtctcaggacccaaatcaggatgagtatcaa
taccctgaggccgcagaaggagatgaagggtattactatgaatatccatactatgaagag
gaaaatgataaagccccaactgtaaagcccacaccagccaccggtgaggaggccatacga
ccgcagccagactttgaagaggataccacagtacccacagaagctccggctgtaactact
gaagcagcaagagtcaagattgaagaaagtgaaggcaacccaggcccaacaacatatgac
tataactatggtgtacatgaagattattactcaccacaaccctacgaagacaccaactac
tctgaggtggatgaaaaagaggagaggaccaatgtggatgaagaatccattgacaggact
gcggaggtcatcaccagcactgtgaccgcaaccaacaacggtacattggtgagtggtgta
ggaagctccagacaggatggaaatgtcgatagtgatttcgccgaggagaccatagacacc
tatgatgactcttttactgaccaggaggagtacggtataggggatttgaatgaatcagct
gtgattgtgccagaatatgagatttctggaggtgctcggggtgagaagggacagaaaggg
gagcctgccatcattgaacctggaatgctggttgaaggcccacccggcccagagggtcca
gccggatattctggtcctcctggaaccacaggtccccccggcccgtctggtgatcctggt
gagaggggaccaactggccgaccaggacttcctggagctgacggtttaccaggacctccc
ggtaccatgctcatgctgcctttccgcttctcaggaggaggagatggatcttccaaagga
ccccaagtatctgcacaggaatcccaggctcaggcaattctacaacaagccaggctggca
ctgagaggaccttctggtccaatgggcctcacaggaagaccaggaccaatgggatctcca
ggtccttctggattaaagggggagtcaggtgacctaggaccacagggtcctcgtggttct
caaggtcccccaggtccttcagggaagccaggacgacggggtcgggcgggcagtgatggt
gctcgtgggatgccaggacaaactggaaccaagggtgacagaggatttgacggtctggct
ggtttacctggagagaaggggcatcgtggtgaatcaggcccatctggacctccaggacca
ccaggagaagatggagagcggggtgatgatggagatgttggacccagaggattgccaggt
gaacctggaccacgagggctactcggaccaaaaggacctccaggcccccctggacctcac
ggtgtggcaggaatggatggaccagtcggcatcaagggcagtgtgggacctcaaggtgaa
ccaggaccaccaggccagcagggaaacccaggtgcacagggtcttccgggtccacaggga
gccatcgggccaccaggagagaagggtccactaggaaaatctggacttcctggcatgcct
ggagctgacggccccgctggtcaccctgggaaggaaggacccccaggagagaaaggaact
ctgggtccttcaggacctcagggaccaattgggtatccaggacctcgtggcgtgaagggt
gctgatggaatccgaggcttgaaaggaacaaagggagagaagggtgaagatggatttcct
ggatttaagggtgacatgggacctaaaggagacagaggtgaaattggtgcatctggtcct
agaggtgaagacggtcctgagggtccaaaggggcgcggcggtcctaatggagaaactggc
ccacttggactggcgggtgaaaagggaaaacttggtgttccaggattgcccggataccca
ggaagacaaggtccaaagggttctatcggctttccaggattccaaggagcaaatggcgag
aaaggcacaagaggaacccctggcaaaccaggtccaagggggcaacgaggtccaacgggt
ccacgtggtgaaagaggtccaaggggtacaacaggaaagccaggccccaagggtaactcc
ggaggggatggcccagctggtcctcctggtgaaaggggaccacccggacctcaaggaccc
actggatttccaggaccaaagggcccccctggtccaccagggaaagatggacttcctggc
caccccggacagagaggtgaaactggctttcaaggaaaaactggccctccaggtccccct
ggcgttgtcggcccacagggtcctactggagagactggtcccatgggcgaaagaggtcat
cccggccctcctggaccacctggtgagcaaggtttacctggtctggcaggaaaggaagga
tctaagggagatcccggcccagctggtgtgcctggtaaagatggaccacctggtttaaga
ggattcactggagaacgtggtcttcctggcccacttggttctcctggactgaaaggcagt
gaaggacccccaggacctcctggccctgctggatctcctggagaaagaggagctgcagga
cctgctggccccattgggttgccaggaagacccggcccacaaggaccacctggaccagct
ggtgaaaaaggggctccaggagaaaagggtcctcaggggccggccggacgtgatggtatc
caaggtcctgttggtctcccaggcccagctggaccagttggtcctccaggagaagatgga
gataagggtgaaattggagagcctggacagaagggaaacaaggctgacaaaggagagcag
ggaccacctggacctgcaggacctcagggacctattggtcagcctggtccatcaggagca
gatggagagcctgggccccgaggacagcaaggcttgtttggtcagaaaggtgacgaaggc
cccagaggtttccctggaccaccaggccctgtcgggctacagggtttacccggacctcca
ggtgagaagggagagacaggtgatgttggtcagatgggaccaccaggtccacctggtcca
agagggcccagtggttcagcaggagctgatggcccacaaggtcctccaggaggagttgga
aatcctgggtcttctggagagaagggtgaccctggagagtctggtgaacctggtcttccg
ggagagcttggaccaccaggcccaaaaggcgaaagaggggaaaaaggagaagcaggtctt
caaggaacagctggtccagctggtccaaaaggacctcctggggatgatggtcctaaaggt
agccctggtcctgttggatttcctggagaccctggcccccctggtgaacatggtccttct
ggtcaagatggacctcctggtgacaaaggagatgatggtgaatctggacagccaggatca
ccaggaccgactggagagccaggtccatctggcccacctggaaaaaggggtccacctggt
ccagcaggtccagaaggacggcaaggagagaaaggtgcaaagggtgaatcaggcttagaa
ggtccttctggcaagactggtcctgttggtcctcaaggccctcctggaaaacctggacct
gaaggtctaagaggtattccaggacctgtgggtgagcaaggtctgccaggatcaactggt
gctgacggcccacctggtcctatgggaccaccaggtttgcccggtttgaagggtgattca
ggtccaaaaggtgaaaagggtcatcctggtttaattggcctcattggacctccgggagaa
cagggtgaaaagggagaccgtggtctaccaggtcctcagggtactcatggaccgaaagga
gaacagggtatttttggcccatctgggcctgtgggtcctcccggtcctccaggattgccg
ggtggtcctgggccaaaaggtgctaaagggtcatcaggtccaaccggtccaaagggtgag
atgggtattcctggccctccaggtcctccaggtcccccaggagaagttatacagccactt
cctgttcagtcatcgaagagaaccaagcgaaatattgatgccagtcaagtggtggatgaa
ggaaatacagatacaaactacatggactatgctgacggtatggaggaaatctttggctct
ctaaattccctgaaactggaaattgaacagatgaaacacccattgggcactcagggtaat
cctgccaggacatgcaaagacttacagctatgtcaccccgacttccctgatggtgaatat
tggattgatcctaaccagggctgctcccgagactcctttaaagtttactgcaattttacg
gcaggtggagaatcgtgcatctttccagacaagaagtctgaaggagctagacttacctcc
tggcccaaagagaaccccggttcctggttcagtgaattcaagcgtggtaaactgttgtcc
tatgtggattcggatggaaatcccattggcgttgtacagatgacattcctgcggttactc
agtgccgctgccaggcagaacgttacctacaactgctaccagtccgtggcttggcacgat
gcctcctctgacagctacgacaaggccatccgcttcttgggatcaaacgatgaagagatg
tcttatgacaacaacccttacattatagccatcatggacggctgtgcatcaaagaagggc
caccagaaaaccatcctggaacttaacacccccaaagtggagcaagcacctatagtggac
cttatgttcaatgactttggagacccaacgcaaaaatttggctttgaagtgggaccagta
tgtttccaaggctaa
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integrated database retrieval system