Nanorana parkeri (Xizang Plateau frog): 108797011
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Entry
108797011 CDS
T04897
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108797011 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108797011 (XAB2)
03041 Spliceosome [BR:
npr03041
]
108797011 (XAB2)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108797011 (XAB2)
Spliceosome [BR:
npr03041
]
Complex B
Other components
Prp19-related factors
108797011 (XAB2)
Complex C
108797011 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_8
TPR_2
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
RPN7
TPR_MalT
NRDE-2
TPR_1
CCDC84
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
108797011
NCBI-ProteinID:
XP_018424078
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MPDHEILIEEDDLQYEEEILRNPYSVKCWMRYIEYKQSASAHVLNLIYERALKELPGSYK
LWYAYLKQRRKQVKRRCLTDPAFEEVNNCHERALVFMHKMPRIWLDYCHFLMDQFKITRT
RRTFDRALRALPITQHHRIWPLYLKFVRAHPLPETAVRVYRRYLKLTPENAEEYIEYLRS
VERLDESVCRLAAIVNQEDFVSKEGKSNYQLWQELCTLLSQNPGSIRSLDSAAIIRGGLT
RFTDQRGKLWCALAEYHTRSGHFEKARDVYEEAIQTVTTVRDFTQVFDSYAQFEESVIAA
KMETVSEMGKEEDDDIDLELRLARFEQLMERRPVLLNGVLLRQNPHNIHEWHKRVQLYQG
KPREIINTYTEAVQTVQPAKATGKPHTLWVAFAKFYEDNGQIDDARAILQRATQVQYTHV
DDLASVWCQFGEMELRHENYEQALRILRKATAVPARKAEYFDSTEPVQNRLYKSLKVWSM
LADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYALFLEEHNYFEESFKAYERGIALFR
WPNVYDIWSTYLSKFIARYGGKKLERARDLFEQSLDGCHLLSDEQSREMCLRFADMESKL
GEIDRARAVYSYCSQMCDPRLTAGFWQTWRDFEVRHGNEDTIREMLRVKRSVQAKYNTQG
TFLVSQRLRAEAIGAGQESKEPVDEMQALEQKAAVVAAQAERDKPQMKEKILFVRSDASK
AELEEMTLQANPDEINIGEEDESEEELEPDEVQLEQKSVPASVFSGLADD
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatcatgagatcctgatcgaggaggatgacctccagtatgaagaggagatcctg
cgtaacccatattcagtcaagtgctggatgcgatatattgaatacaagcaatctgcctcg
gcacacgtactgaacctgatatacgagagagcgctgaaggagctgccaggaagttacaaa
ttatggtacgcatacctaaaacagcgcaggaagcaggtgaagaggcggtgccttaccgat
ccggccttcgaggaagtaaataattgccatgagcgagccctggtcttcatgcacaagatg
ccccgaatttggctggattactgccacttccttatggatcagtttaaaattacccgcaca
agaaggacgtttgaccgcgctctacgcgcgctccccattacgcagcaccatcgcatctgg
ccgctgtacctgaaatttgtccgcgctcacccccttccagagacggcagtcagagtctac
aggagatacctgaagctgacgcctgaaaatgctgaggagtatatcgagtatctgcgctcg
gtggagaggttggacgagtctgtatgtaggctggcagccattgtgaaccaagaagacttt
gtgtccaaggagggaaaatcaaactaccagctgtggcaggagttgtgtaccctcctctcc
cagaaccccggatctatacgctctctggactctgctgccattattcgtggtggcctcacc
cgcttcaccgaccagaggggcaagctgtggtgtgccctggctgagtatcacacccggagt
ggtcactttgaaaaggcacgagatgtttatgaagaggccattcagacggtcaccactgtc
cgtgacttcactcaggtgttcgacagctatgctcagttcgaagaaagcgtcattgcagcc
aaaatggaaaccgtcagtgagatgggaaaagaagaggacgatgacatagacctggagctg
cgattggcccgcttcgagcagctgatggagaggagaccggtcttactaaatggggtgctg
ctgagacagaacccacacaatatccacgagtggcacaagagggtgcagctgtaccaaggc
aaaccacgggagatcataaacacatacacggaagctgttcagaccgtacagccagcaaag
gccactgggaagccgcacacgctctgggttgcgtttgctaaattttatgaagacaacgga
cagatcgacgatgcccgggccatcctccagagagccacccaggtacagtacacgcatgtg
gatgacttggcctccgtctggtgccagtttggtgagatggagctgagacacgagaactat
gagcaggctttgaggatcctcaggaaagccactgccgtgccggctcgcaaggctgaatac
tttgactcaacggagcccgtgcagaacagactgtacaagtcattgaaggtgtggtccatg
ctggccgatctggaggaaagtttaggcacttttaagtccaccaaggccgtgtacgatcgc
atcattgatctccgtatcgccaccccgcagattataatcaattacgctttgttcttggag
gaacacaactactttgaggaaagttttaaggcctacgagcgcggcatcgccctcttccgc
tggccgaacgtctacgatatctggagtacttatctgtccaaattcattgctcgatacgga
ggaaagaagctggagagagctcgcgatctgtttgaacaatctctggatggctgtcatctg
ttgtcggacgagcagtcccgggagatgtgtctgcggtttgccgatatggagagtaagctc
ggggagatcgatcgagcccgcgctgtgtattcatactgctctcagatgtgtgaccccagg
ctgacggccggcttctggcagacttggagagactttgaggtgcggcacggcaatgaggac
acgattcgggagatgctgcgtgttaaacggagcgtgcaagccaaatacaacacgcagggc
acgttccttgtgtcccagagactgagggcagaagcaataggagctggccaggaatcgaaa
gaaccggtggatgagatgcaggctctggagcagaaggcagcggtggtggcagcccaggct
gaaagggataaaccacagatgaaggagaagatcctgtttgttaggtccgatgcttccaag
gcagaattagaagagatgacactgcaggccaatccggacgagattaatattggggaggaa
gacgagtccgaagaggagctggagccggatgaagtacaattggagcagaaatcggtccct
gcttcggtcttctctgggcttgccgacgattaa
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integrated database retrieval system
