Nanorana parkeri (Xizang Plateau frog): 108797578
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Entry
108797578 CDS
T04897
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108797578 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108797578 (BARD1)
04121 Ubiquitin system [BR:
npr04121
]
108797578 (BARD1)
03036 Chromosome and associated proteins [BR:
npr03036
]
108797578 (BARD1)
03400 DNA repair and recombination proteins [BR:
npr03400
]
108797578 (BARD1)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108797578 (BARD1)
Ubiquitin system [BR:
npr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108797578 (BARD1)
Chromosome and associated proteins [BR:
npr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108797578 (BARD1)
DNA repair and recombination proteins [BR:
npr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
108797578 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
zf-C3HC4_2
zf-C3HC4
zf-RING_5
RTT107_BRCT_5
ANK_LRRK2
Ank_KRIT1
zf-RING_UBOX
Prok-RING_4
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
108797578
NCBI-ProteinID:
XP_018424695
LinkDB
All DBs
Position
Unknown
AA seq
800 aa
AA seq
DB search
MPLRVRSGNRPPDSGDSVMIRHMDDWSRTREALRELEEKLCCSVCLLTLKQPVCLGGCEH
VFCRTCVGDNVGNECPLCHTPAWVKDVQINRQLDNIIHLCSRLNSLLDKGKQDENDLDLC
QDASLKQNTTQEKCNKNQIKMRFSPRRGKVRYVLEKGVNQQIPSKREQIPVLETYEFVSS
SPDIEPMKKKRNNSKPRKSKKKKLADINQEWGVGAQTQNGDDVEKKDVSKTIRSVSFCSS
PVVVATSLSLQENDQNSDSPVKKSQTRNVDCFEEHTATESKNSKKLTKVSPLKPSVPVSN
TIVSKSLLQQDCVSNGTQVDGSNQDKNKSGVDNVEEKNSNKKPLRSTRQKNALNVTPKRE
NTSLKRKERPSVSPVSTTSKRSRQGPLKPRVTCKSEEIEDIADSKLEQPQLLSKPSTPSS
KNGRRTSQTSACIQMSPSSPFVSRKNIKGETLLHVASIKGDLKGVEELLKNGANPNVKDN
AGWTPLHEACNHGHSVVVELLIQYQALVNTAGYQNDTPLHDAAKNGHVAIVKLLLNHGAS
PNAINIFGLRPVDYAETEEIKLALLQAQKNKEPLVKLPCSALNRQQRREEPVVLLASGLS
ASQKTNLAKLASLLKAEICSNYSSSVTHLIVGEDPMLRTLKCMMGMSSGCWILQYAWVKT
CLESCGREPEEAHEVKGGPQKARLNREQMLPKLLDGCHFYFLGSFKEHKKEDLTELVKAA
GGQILIRQPKPDSDVTQTINTVAYHADADSDQRFCTQYIIYDKTSKYVPGKVRQGKVWFA
PSSWLIDCIICFQLLPVQQE
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgcctttacgagtccgatccgggaaccgacctccggacagcggagactccgtcatgatc
cgacacatggatgactggagccggacccgagaggcgctgcgagagctggaagagaagctg
tgctgctctgtatgcttgttgacattgaagcagcccgtatgcttgggtggatgtgaacat
gtgttttgcaggacatgtgtgggtgacaatgttggaaatgaatgccccctgtgccacaca
ccagcctgggtaaaagatgtgcagatcaaccggcagcttgataacattattcatctatgt
agtaggctgaacagcctactagataaaggaaaacaagatgaaaacgacttggatttatgt
caagatgcgtcgctcaaacagaataccactcaagaaaaatgcaataaaaaccagataaaa
atgaggttcagccctcggagaggaaaggtgaggtatgtcttggagaaaggagttaaccaa
caaattccatcaaaacgtgaacagattccagtgttagaaacatacgagtttgtgtcatct
tcacccgacatagagcccatgaagaaaaagcgaaataattcaaagccaagaaagtccaaa
aagaagaaactagcagatatcaaccaagaatggggagttggggcacaaacgcagaacggt
gatgacgtcgagaaaaaagatgtttcgaaaaccattagatccgtttcattttgcagttct
cctgtagtagttgcaacatcactcagtctacaggaaaacgatcaaaactctgattcacca
gtaaaaaaaagtcagactaggaatgtggactgttttgaagaacatacagcaactgaatct
aaaaatagtaaaaagttgacaaaggtcagtccattgaagccttctgtgccagtttctaac
actattgtatctaagtctctattgcagcaagactgtgtctctaatggtacccaggtagat
ggaagtaaccaagacaagaataagagtggagttgataatgttgaagaaaaaaacagtaac
aaaaaacctttacgaagtacaaggcaaaaaaatgcattaaatgtaactcctaaaagagaa
aatacatccttaaaacgcaaagaacgcccatccgtttctccagtttccactacctctaaa
cgctcaagacaagggcctctaaagccaagagtcacctgtaagtctgaggagatagaagac
atagcggattcaaagctagaacagccacaattgctttccaagccttctacaccctcttct
aaaaatggaagaagaacaagccaaactagtgcctgtattcagatgtctccaagtagccct
tttgtttctaggaagaacattaagggagagacattgcttcatgttgcttctataaagggg
gacctgaaaggagtggaggagcttctcaaaaatggagctaaccccaatgtgaaggacaat
gctggctggacacccttgcatgaagcctgtaatcacggacactcagtcgtggtagaacta
ttgattcagtaccaagctctggtgaataccgctggttaccagaacgacactcctttacat
gatgctgcaaaaaatggccatgtagccattgtcaaactgttgctcaaccatggagcatcc
ccgaatgcaattaatatattcggtctgcggcctgtagactatgcagaaacagaggagata
aagttggcattgctgcaagcacagaaaaacaaggaaccacttgtgaagctgccatgctct
gccctgaacagacagcaacgtagggaagagcccgtagtccttttggctagtggcctgtca
gcttctcaaaagactaatctcgcaaagcttgcttcccttctgaaagcagaaatatgctcc
aactacagtagttcagtaacacaccttattgtcggggaggatcctatgcttcgtaccttg
aagtgtatgatggggatgtcatctggttgctggatccttcaatatgcttgggtgaagacc
tgcctagagtcatgtggccgggagccagaagaagcacatgaggtgaagggcggacctcag
aaagcgcgcctcaaccgagaacagatgcttccaaaactattggatggatgtcatttttat
ttcctgggatccttcaaagaacacaaaaaggaagacttgactgagctggttaaagctgct
ggaggacaaattctcattcgccaaccaaagcctgatagcgatgtgacccagactattaac
actgtagcttaccatgctgatgctgactctgatcaaaggttctgcacacagtatatcatt
tatgataagacgtctaaatatgtcccaggcaaagtacgccaaggcaaggtctggtttgca
ccctcaagctggctgattgactgtataatctgctttcagctgctgcctgtgcaacaagaa
taa
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