Nanorana parkeri (Xizang Plateau frog): 108801872
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Entry
108801872 CDS
T04897
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108801872 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108801872 (PATL1)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108801872 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
108801872 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
QRICH1
Motif
Other DBs
NCBI-GeneID:
108801872
NCBI-ProteinID:
XP_018429289
LinkDB
All DBs
Position
Unknown
AA seq
757 aa
AA seq
DB search
MFGQPGGRNGKRRERVRAHRSKGGAERPREGARDMLRCQSLEDGDGFPGLEEDEEIDQFN
DDTFGAGANDDDWRGEHERLAEIEEKHTDSHLLARSSSPNTDPLGEQQEELEYSLSQLVR
EVEEPALPTGSRTRISSRINSSIWDPDLRPIRGPLLTEDMSPSSLLHEYGLAPMPPPGRD
DPEQDASERALPRRSTSPVIGSPPVRAVPIGTPPKHVVPIFTQQQVLCPNPIHIRAASFN
NHPNNPAALLRHPFPSALSPLQRAQLLGGAQAAAGRMSPSQFARTAGLHGPTLAGVTPKL
LQGHVGPMVTPGAGGFRPFFGVPPTAAPGAHLKNLRSPQQRQPLPFLPDTTHLHPQHRRL
LFQRQQNRNQHRGLNGTGGDRSSRPQQTEPHRRDAYAGLMLQREKEWVCRIQLLQLQSTD
PYHDDFYYQNYFEKLDKLSASQDRPSEGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKL
TVSSVNNPRKMIDAVATHRSDEEETREKQVRDKRRQTLVVIEKVFSVLLDLEDFERRFSL
CCEDEEREALTEERRHKLQQLCDILRGKEGSERAAEEQFVQIMCIRKGKRLVARIIRLLP
LQLSIALLSTTAQSLPFLIKKDYQDQILPCLVSPCALVISQLSATALTSLLQSVCGSGNT
SSQQLLSVLQNKFGLTLVCQILGKAEELMSSENSTTLNQSLWTPLVAQVTHFLLQIQASS
LAQPLCSPGTALLHFSRYLDDQTLGQLRSRLRSAPSP
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgttcggccaaccaggaggaaggaacgggaagaggagggagcgcgtgcgcgcgcaccgg
agtaaggggggggcggagaggccaagagagggagcaagagacatgctgcggtgtcagtct
ctcgaggatggtgatggcttcccaggcctcgaagaagatgaggaaattgaccagtttaat
gatgatacgtttggagcaggagcaaatgatgatgattggcggggggaacatgagcggctg
gcagagattgaggagaaacacacagactctcaccttttggccagaagttcctcccccaat
actgatccactgggggagcaacaggaggaactggagtacagcctgagccagctggtgaga
gaggtcgaggagccagccctgccaacagggtcacgcacccggatttcttctaggattaac
tctagtatatgggatcctgacttgcggccgattagagggcctttgctcaccgaggatatg
agcccatcgtcactgctgcatgagtatggccttgctcccatgcctccacctggccgcgat
gacccagaacaagacgcttcagaaagagctttgccccgccgctctacttcaccagttatt
ggaagccctcctgtgcgagctgtacccattgggactccaccaaaacatgttgtccctata
ttcactcaacagcaggttttgtgcccaaatcctatccacattcgagctgcctcattcaac
aatcatccgaataacccagcagcgcttttgagacacccgttcccttccgccctctcccca
cttcagcgggcgcagctcctgggaggagcacaggcagccgctggccggatgtcgcccagt
cagtttgcccgtactgctggcctccatggacctactttagctggtgttacccccaagctt
ctacagggccatgtggggcccatggtgaccccaggagctggagggtttcgacctttcttt
ggtgttccccccacagctgcaccaggagctcatttaaaaaacctgagatccccgcaacaa
cggcagccccttccgttcctccctgacacgactcaccttcacccacagcacagacgcctg
ctttttcagcgccagcagaaccgcaatcagcatcgaggattgaatggcactggaggggat
cgctcttcccgcccccaacaaacagaacctcatcggcgggatgcttatgcaggtctaatg
cttcagcgagaaaaggagtgggtgtgtcgtatccagctcctccagctacagagcacagat
ccctatcatgatgacttctactatcagaattactttgagaagttggataagctgtctgcc
agccaagacaggccaagcgagggccccaaaaaagagaggacaaagctgataacgccacaa
gtggccaaactggagcacacctacaaaccagtgcagtttgaaggctctcttgggaagttg
accgtttccagtgtgaacaacccgcggaagatgattgatgccgtggctacacatcgttct
gatgaagaggaaacccgggagaaacaagtgagagacaaaagacggcagaccttagtggta
attgaaaaggtcttttctgtcttgttggatttggaagactttgaacggcggttttccctg
tgctgtgaagatgaggagagagaggctctgacagaagaacgcaggcacaaactgcagcag
ctctgtgacatcttgcggggcaaggaaggaagtgagcgggcagccgaggagcagtttgtc
cagatcatgtgcattagaaagggaaagcgccttgtggctcggatcattcgcttgttgcca
cttcagctaagcatagctttactgtccaccactgcacagagcttgccttttctcatcaag
aaggattatcaagaccagatacttccctgcctggttagcccctgtgcccttgtgattagc
cagctgtctgctactgctctcacttccctcttacagagtgtttgtggctctggaaacact
tcctcgcagcagctgttatctgtcttacaaaacaagtttggactgacgctggtgtgccag
attctggggaaagcggaggagctgatgagttccgaaaattccacaacgctgaatcagtct
ctctggacgcctttggttgcacaagtcactcacttcctcctgcagatacaagcctcctcc
ctggctcagcctctctgctctccaggcaccgctctgcttcacttttcacggtacctcgat
gatcagactctcggacagctgcggtctagactcaggtctgctcccagcccatga
DBGET
integrated database retrieval system
