Nanorana parkeri (Xizang Plateau frog): 108801908
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Entry
108801908 CDS
T04897
Symbol
PRPF8
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108801908 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npr03041
]
108801908 (PRPF8)
Spliceosome [BR:
npr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108801908 (PRPF8)
Complex C
U5 SnRNP specific factors
108801908 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
RRM_4
PROCT
JAB
Motif
Other DBs
NCBI-GeneID:
108801908
NCBI-ProteinID:
XP_018429321
LinkDB
All DBs
Position
Unknown
AA seq
2326 aa
AA seq
DB search
MAGVFPYRPGVPPMPGPPPVAPDYMSEDKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDNEEDAPVMDWFYDHQPLRDNRKYVNGTTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELAEYVEPFLKDTPLYSDNTANGIALLWGPRPFNLRSGRTRR
AVDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWDTTEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDVATE
AAHPIRLYCRYIDRIHIFFRFSADDARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGGKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQISGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
NQLPQHEYLKEMEPLGWVHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCRSVX
LTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQASWNYNFMGVRHD
PNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
6981 nt
NT seq
+upstream
nt +downstream
nt
atggctggggtgtttccgtacagacctggggttccccccatgcctggcccaccaccggta
gcaccagattacatgtctgaagacaagttacaggagaaagctcggaaatggcaacagctg
caggccaaacgttatgcagagaaaaggaagtttggctttgtggatgctcagaaagaggac
atgcccccagagcatgtgcgcaaaattatccgtgaccatggtgatatgaccaacaggaag
ttccgccatgataagagggtctaccttggggccctgaagtacatgccacacgcagtgctg
aaattactggaaaatatgcccatgccttgggagcaaattagagatgtgcctgtgttgtat
catattaccggagccatttccttcgtcaatgagatcccttgggttattgagcctgtttac
atagcacaatgggggtcaatgtggatcatgatgaggagagaaaagagagacagacgtcat
ttcaaacgcatgaggttccctccctttgatgatgaagaaccacctctggattatgctgat
aacattcttgatgtggagcccctggaggctattcagttggagttggacaatgaagaagat
gctccagtcatggactggttctatgatcaccagccacttagagacaacagaaaatatgtg
aatggaacaacgtaccaacgctggcagttcacacttcccatgatgtctacattgtaccga
cttgccaatcagctcctaacagatctagttgatgacaactacttttacctgtttgatttg
aaagcttttttcacatctaaggctttaaacatggcaattccaggcggaccaaaatttgag
ccattggttcgcgacataaatttgcaggacgaagattggaatgagttcaatgacattaac
aaaatcattattcgccagccaattcgcacagagtacaagatcgcatttccatatctgtac
aacaatctccctcatcatgtacatctgacatggtaccatacgccaaatgtggttttcatt
aaaacagaggatcctgatctgccagctttttactttgatcctctgatcaaccccatttca
cacagacattctgtaaagagtcaggagcctttgccagatgatgatgaagagtttgagtta
gcagaatatgttgaaccgttcctcaaggatactcctctatattcagacaacacagccaat
ggcatagccctgctttgggggcctcgcccgttcaatctgaggtctggcagaacacgaagg
gctgttgacattcctctggtaaagaactggtaccgggagcattgtccagctggtcagcct
gttaaagttcgtgtctcctatcagaaactactgaaatactatgtccttaatgctcttaaa
catagaccacctaaggcccagaaaaagaggtatctcttccgctcattcaaagctaccaag
ttcttccagtccactaagctggactgggtcgaggttggacttcaggtttgtcgccagggc
tacaacatgctgaacttgctgatccacagaaagaacttgaactatcttcacttggactac
aatttcaatctgaaacctgtgaaaacactgaccaccaaggaacgtaagaagtctcggttt
ggcaatgccttccatctgtgccgagaagttcttcgtctgactaaactggtggtggatagc
catgtgcagtataggcttggtaacgtggatgctttccagttgtctgatggactccagtac
atctttgctcatgtgggccagctgactggcatgtacagatacaagtacaaactcatgaga
cagattcgaatgtgcaaggacttgaaacaccttatctactacaggttcaatacaggtcca
gtaggaaaaggaccaggttgtggcttttgggcagctggctggagagtttggctcttcttt
atgcgtggcataaccccattgctggagagatggcttggaaatctgctggctagacagttt
gaaggtcgtcattccaagggggttgcgaaaacggtgaccaagcagagagtggagtctcac
tttgatctagagctgagagcagctgtcatgcatgacattttggacatgatgccagaaggt
atcaagcagaacaaagctaggaccatcttgcagcacttgagtgaagcctggagatgctgg
aaagcaaacattccctggaaggtaccaggccttcctacgcccattgaaaacatgatactc
cgatatgtgaaagcaaaggctgattggtggacaaacactgctcattacaacagagagcgt
attcgccgtggcgcaactgtggacaaaactgtgtgtaagaagaatctgggccgtctgact
cgtctgtacctgaaggctgagcaagagaggcaacacaactacctaaaggatgggccttac
atcactgctgaagaggctgtagcagtgtataccaccacagtgcactggctggaaagcagg
aggttctctcctattccattccctcctctttcctacaaacatgatactaaactactcatc
ctggctcttgagagactgaaggaagcatacagtgtgaagtcccgtttaaatcagtctcag
agagaagagttgggtttgattgaacaagcgtatgacaatcctcacgaagcattgtccaga
atcaagcgtcacttgctcactcaaagagctttcaaggaggtgggtattgagtttatggat
ctttatagtcacctggtccctgtctatgatgttgagcctcttgagaagatcactgatgct
tacctggatcaatatctgtggtatgaagcagacaagaggcgtctcttccctccttggatc
aaacctgccgacacagagccacctcctttgcttgtgtacaagtggtgccaaggtatcaac
aacctacaggatgtgtgggacaccacggaaggagaatgcaatgtaatgcttgagtctcgg
tttgagaaaatgtatgagaagatcgacttgactctgctgaatcgtcttctgcgtctaatt
gtcgatcacaacattgccgattacatgacagctaaaaacaacgttgtcatcaattacaaa
gacatgaatcacaccaactcctatggcattattcgtggactccagtttgcttctttcatt
gttcagtactacggtttggtgatggacctgttagttcttggtttgcacagagccagtgag
atggctggcccacctcaaatgccaaatgatttcttgagtttccaggatgtggccacagaa
gccgctcaccccatccgcctgtattgcagatacattgatcgcatccacatttttttcaga
ttttcagcagatgatgctcgagatcttattcagaggtatcttacagagcatccagatccc
aataatgagaacattgtagggtacaacaataaaaagtgttggccacgagacgccagaatg
agacttatgaagcatgatgttaatcttggccgtgctgtgttttgggacattaaaaaccgt
cttccacgttctgtcacaactgtacagtgggagaacagctttgtgtctgtgtacagtaaa
gacaaccccaacctgctcttcaacatgtgtggttttgagtgcagaattctgcccaagtgc
cgtacaagctatgaggaattcactcataaagacggagtctggaacctgcagaatgaggtg
accaaagaacgtacagctcagtgtttcctacgagtggacgatgagtccatgcagagattc
cacaacagagttcgtcagattctaatggcttcaggatccactacatttactaagattgtg
aacaagtggaataccgcactgattggcctgatgacttatttccgtgaggctgtggtcaac
acacaggagttgcttgatctgttggtgaaatgtgaaaacaaaatccaaaccagaattaag
attggtctgaactctaagatgcccagtcgtttcccccctgtggtcttctacacacccaag
gagcttggtggtttagggatgttgtctatgggacacgtgctcatcccacagtctgacctc
aggtggtcaaagcagacagatgttggcatcacccacttccgctctggtatgagtcatgag
gaggatcagctgatccctaacttgtatcgctacattcagccctgggaaagtgagttcatt
gactctcagcgagtctgggctgaatacgctttgaagaggcaagaggccattgctcagaac
agacgtcttacattggaagatttggaggattcatgggatagaggtattccacgaatcaac
accctgttccagaaagacaggcacaccctggcctatgacaagggctggagagtccgtaca
gacttcaagcagtatcaggtactgaaacagaatccattctggtggacacatcaacgtcat
gatggaaagctctggaacttgaataactaccgtacagatatgatccaggcacttggagga
gtggaggggattctggagcacacattgttcaaaggcacttacttccccacatgggagggt
cttttctgggaaaaagccagcggctttgaggaatccatgaaatggaagaaactgaccaac
gctcagaggtctggtttaaatcagatccccaacagaaggttcactttgtggtggtcgcct
acaataaacagagccaatgtgtatgtcggtttccaggtacagctggatttgactggcatt
ttcatgcatggcaaaattcccacattgaagatctctttgattcagattttcagggcccat
ttgtggcagaagatccatgagagcattgtaatggatctgtgtcaggtgtttgaccaagag
ctggatgctctagagattgagactgtccagaaggagaccatccaccccaggaagtcttat
aagatgaattcatcttgtgcggatatcttgctttttgcttcctacaagtggaatgtctct
cgtccttctttacttgcggactccaaggatgtcatggacagcaccaccacacaaaagtac
tggattgatatccaattgagatggggagactatgactctcatgacattgaacgatatgcc
cgtgcaaagtttctagactataccactgataacatgagtatctacccatcacctaccggt
gtgctgattgccattgacttggcctataacctccacagtgcctatggaaattggttccct
ggtgggaaacctcttattcagcaagcaatggccaagattatgaaggctaaccccgctctt
tatgtgctacgcgagcgcattcgtaagggattacagctgtactcttcagagcccactgag
ccttatctgtcctctcagaactacggcgagctcttctccaatcagatcatctggtttgtg
gatgacaccaatgtgtacagagtaaccatacacaagacctttgaaggtaacttgacaacc
aaacccatcaatggggccatcttcatctttaaccccaggactgggcagcttttcttgaag
attattcatacctctgtatgggcagggcagaagcgattgggtcagctggccaagtggaag
actgcagaagaagttgctgctttgatccgatctttgccagttgaggagcagccgaaacag
atcattgtcaccagaaagggcatgttggatcctcttgaggtgcatttgcttgacttccca
aacattgtgatcaaaggctctgagttgcagctgcctttccaggcctgtctgaaggtggaa
aagtttggtgatctgattcttaaagctacagagccccagatggttcttttcaacctctat
gatgactggctgaagaccatttcttcatacacagcattctctcgactgatcttgatttta
agagccttgcatgtcaacaatgaccgtgcaaaggtcatcctgaaaccagacaagacaaca
atcactgagcctcatcatatctggcccacactgactgatgaggaatggatcaaggttgaa
gttcagctgaaggatttgatcttggctgactatggaaagaagaacaatgtcaatgtggca
tccctaactcagtctgaaatcagagatatcattttgggtatggaaatctctgcaccatcc
cagcagaggcaacagattgctgagattgagaagcaaacaaaggagcagtctcagctcacg
gctacccagacacgcactgttaacaaacacggagatgagatcattacttcaaccactagt
aactatgagacccagaccttctcttcaaagacagaatggcgtgtcagagctatatctgca
gctaatcttcacctgcgaaccaatcacatctatgtgtcatctgatgatatcaaggagact
ggttacacatacatcctgcctaagaatgtgctgaagaagtttatttgcatttctgacctg
cgagctcagatttctggctacttgtatggagtgagtccaccagataacccacaagtgaag
gagatccgttgtattgtgatggttccacagtggggaactcaccaaacggtccacttacct
aatcagctgccccaacatgagtatttgaaggaaatggaacctctgggatgggttcataca
caacccaatgagtctccacagctgtctccacaagatgttaccagtcatgctaaaatcatg
gctgacaacccagcctgggatggagagaaaaccatcattataacctgcaggtcagtanta
ctgacccccagcggatacgaatggggaagacagaacactgataaagggaacaaccccaaa
ggctacttgccatctcattacgagagagtccagatgctgttatctgatcgcttcctgggg
ttcttcatggtgccagcacaagcatcctggaactacaacttcatgggtgtcagacatgat
cccaacatgaaatatgagttacaactggctaatcccaaggagttttaccatgaagtccac
cgcccctcacacttcttaaacttcgccttgttgcaggagggtgaggtgtactctgctgac
cgtgaagacctgtatgcatag
DBGET
integrated database retrieval system
