KEGG   Nanorana parkeri (Xizang Plateau frog): 108804426
Entry
108804426         CDS       T04897                                 
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
npr  Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:npr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108804426 (SF3B1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:npr03041]
    108804426 (SF3B1)
   03036 Chromosome and associated proteins [BR:npr03036]
    108804426 (SF3B1)
Spliceosome [BR:npr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108804426 (SF3B1)
 Complex B
    108804426 (SF3B1)
 Complex C
   U2 SnRNP specific factors
    108804426 (SF3B1)
Chromosome and associated proteins [BR:npr03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    108804426 (SF3B1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298
Other DBs
NCBI-GeneID: 108804426
NCBI-ProteinID: XP_018431646
LinkDB
Position
Unknown
AA seq 1306 aa
MAKIAKTYEDIDAQIREIQVKKATLDETQGVGLDSTGYFDRDIYGGSDSRFSGYLTSIAT
NEQEDDDDEDSSAAAFEKKPGYHAPVALLNDIPQSSEQYDPFAEHRPQKIADREDEYKKH
RRTMIISPERLDPFADGGKTPDPKTNARTYTDVMKEKQLRKEQYEIHQQIAEKAKSGDLK
VVNGSSASASSQPSSKRKRRWDQTADQTPGSTPKKISSWDQAEVTPGHTPSLRWDETPGR
SKGNDTPGATPGSKIWDPTPSHTPSGAATPGRGDTPGHATPGHGGATSSARKNRWDETPK
TERDIPGHGSGWAETPRTDRGGESIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKT
PIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDDELDAMFPEGYKVLPPP
AGYVPIRTPARKLTATPTPLGGLTGFHMPAEDKTMKNVSDQPSGNLPFLKPDDIQYFDKL
LVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPL
LMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIIS
NLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSW
QARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATP
YGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQ
SPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTV
ELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILY
AFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRT
AVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLP
RLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATV
NTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV
PELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLG
VYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPA
RKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq 3921 nt   +upstreamnt  +downstreamnt
atggcgaagatcgcaaaaacatacgaagatatcgatgcacaaatacgtgaaattcaagta
aagaaggcaacactcgatgaaacacaaggagttggacttgactccacaggttactttgac
cgggatatatatggtggaagtgacagcagattttcaggatatttgacatctattgcaaca
aatgaacaagaagatgatgatgatgaggactcttcagcagcggcatttgagaaaaaacca
ggatatcatgcacctgttgcattgcttaatgacatccctcaatcatctgaacaatatgat
ccatttgctgaacatcgacctcagaaaattgcagaccgggaggacgaatataaaaagcat
agacgaacaatgatcatttctccagagcgccttgacccttttgcagatggaggcaagact
ccagatccaaaaacaaatgcacgaacatacacagatgttatgaaagagaagcagttaaga
aaggaacagtatgaaatccatcagcagatagcagaaaaggcaaaatctggtgatttaaag
gtagtcaatggatcctctgcttcagcatcatcacagccatcttcaaagcgtaaaagaaga
tgggatcaaacagctgaccaaactccagggtctacacctaagaagatttcaagctgggac
caagccgaggtcactcctggacacacaccttcattaagatgggatgagacccctggtcga
tcaaagggaaatgacacccctggggctactccaggctcaaagatctgggatcctactccc
agccatacaccttctggagcagctacaccaggtcgtggtgataccccaggccatgcaact
ccagggcatggaggtgcaacttccagtgcacgtaaaaacagatgggatgaaactccgaaa
acagaacgggatattcctggtcatggaagtgggtgggctgagactccacgtacagatcgt
ggtggagaatcaattggtgaaaccccaactcctggggcaagtaaaagaaagtctcgttgg
gatgaaactccagctagtcagatgggtggtagtactccggtactgacaccagggaaaact
ccaattggaacccctgctatgaatatggctactcctactccaggacacattatgagtatg
actcctgaacaacttcaagcatggcgttgggagcgagaaattgatgaaagaaatcgccca
ctttctgatgatgagttggatgccatgtttccagagggatataaggttctccccccacca
gcgggatatgtcccaatacgtaccccagcacgtaaactgacagcaactccaacacctttg
ggtggcttaactggttttcatatgcctgctgaagacaagacaatgaaaaatgtcagtgat
cagccatcgggaaatcttcctttccttaaaccagatgatattcagtactttgataaactg
ttggttgatgtggatgaatccactcttagtccagaagagcagaaggaaagaaaaataatg
aaactactgctgaaaattaagaatggtacacctccaatgagaaaggcagctctgcgccag
attacagataaagcgcgtgagtttggagctggacctttgttcaatcagatattaccattg
ctgatgtctccaacacttgaagaccaggaacgacatttacttgttaaagttattgatagg
atcttgtacaaacttgatgatttggttcgaccgtatgtacacaagattcttgtggttatt
gaacccttgctgattgatgaagactattatgccagagtagaaggtagagaaattatctct
aacttggctaaggctgctggtttagccactatgatttccacaatgagaccagatattgac
aacatggatgaatatgtccgtaacacaacagccagagcttttgcggtggttgcttctgca
cttggcattccgtccttgctccctttcttgaaagctgtttgtaagagcaaaaagtcatgg
caggcccgccacactggtattaagattgtgcagcagattgctatactgatgggttgtgct
atcttaccgcacttaagaagcttggttgaaatcattgaacatggattggttgatgaacag
cagaaagttcgtaccatcagtgctctggctatagctgctttagctgaagcagccacacct
tacggtattgagtcttttgattctgtgctaaaacctctctggaagggtatcagacagcac
agaggaaagggtctggctgcgttcttgaaagccattggctaccttatacctctcatggat
gctgaatatgcaaactactataccagagaagtgatgttgattttaatccgagagtttcag
tctcctgatgaagaaatgaaaaagattgttttaaaggtggtgaagcagtgttgtggtact
gatggtgtggaagcaaattacataaagacagaaattcttcccccatttttcaaacacttc
tggcagcatagaatggctttggacagaagaaactatagacagttggtggacactacagtt
gagcttgcaaataaagtgggagctgcagaaattatatctagaattgtggatgacctaaag
gatgaagctgagcaatacagaaaaatggtcatggaaaccattgagaaaataatgggcaac
cttggagctgctgacattgaccacaagcttgaggaacagttgattgatggcatcctttat
gcttttcaggagcagaccacagaggattcagtcatgttgaacggttttggtacagttgtg
aatgctcttggaaaaagagtgaaaccataccttccccagatttgtggtactgtgttgtgg
cgtttaaacaacaaatctgctaaagtaagacaacaggctgctgatttaatatctcgcact
gcagttgtcatgaaaacatgtcaagaggaaaaactaatgggacatttgggtgttgtgttg
tatgaatatcttggagaggagtatcctgaagtattgggaagcattttaggagccctaaag
gcaatagtcaacgttattggtatgcataaaatgactcctccaatcaaggatttgcttcca
agacttacacctattttgaaaaataggcatgagaaagtacaggagaactgcattgacctg
gttgggcgtatagctgataggggagcagaatatgtttcagcaagagagtggatgaggatt
tgttttgaacttttagaactgctaaaggctcataaaaaagcaatcaggagagccactgtg
aacacatttggctacattgctaaagctattggacctcatgatgtgcttgctacactgctt
aataacttaaaagtacaagaaaggcaaaaccgagtgtgtaccaccgttgcaatcgctatt
gttgcagaaacctgttcaccttttacagttctaccagcgctaatgaatgaatatagagtt
ccagaacttaatgttcagaacggtgtattaaagtctttgtctttccttttcgagtatatt
ggagaaatgggaaaagactatatctatgctgtaacacctctgcttgaagatgctttgatg
gatagagatcttgttcacagacagacagctagtgctgttgttcagcacatgtcccttgga
gtttatggttttggttgtgaagattctttaaatcaccttttaaattatgtatggcccaat
gtgtttgagacatctcctcatgtaatccaagcagtgatgggagcccttgaaggccttagg
gttgctattgggccatgccgaatgctgcaatattgcctacagggtctcttccatcctgcc
agaaaagtcagagatgtttactggaaaatatacaactctatatacattggatcacaagat
gctttgattgcccattatccccgtatctataatgatgagaagaatacttacattcgttac
gagcttgactacatcttataa

DBGET integrated database retrieval system