Nanorana parkeri (Xizang Plateau frog): 108804426
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Entry
108804426 CDS
T04897
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108804426 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npr03041
]
108804426 (SF3B1)
03036 Chromosome and associated proteins [BR:
npr03036
]
108804426 (SF3B1)
Spliceosome [BR:
npr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108804426 (SF3B1)
Complex B
108804426 (SF3B1)
Complex C
U2 SnRNP specific factors
108804426 (SF3B1)
Chromosome and associated proteins [BR:
npr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
108804426 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
108804426
NCBI-ProteinID:
XP_018431646
LinkDB
All DBs
Position
Unknown
AA seq
1306 aa
AA seq
DB search
MAKIAKTYEDIDAQIREIQVKKATLDETQGVGLDSTGYFDRDIYGGSDSRFSGYLTSIAT
NEQEDDDDEDSSAAAFEKKPGYHAPVALLNDIPQSSEQYDPFAEHRPQKIADREDEYKKH
RRTMIISPERLDPFADGGKTPDPKTNARTYTDVMKEKQLRKEQYEIHQQIAEKAKSGDLK
VVNGSSASASSQPSSKRKRRWDQTADQTPGSTPKKISSWDQAEVTPGHTPSLRWDETPGR
SKGNDTPGATPGSKIWDPTPSHTPSGAATPGRGDTPGHATPGHGGATSSARKNRWDETPK
TERDIPGHGSGWAETPRTDRGGESIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKT
PIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDDELDAMFPEGYKVLPPP
AGYVPIRTPARKLTATPTPLGGLTGFHMPAEDKTMKNVSDQPSGNLPFLKPDDIQYFDKL
LVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPL
LMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIIS
NLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSW
QARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATP
YGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQ
SPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTV
ELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILY
AFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRT
AVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLP
RLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATV
NTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV
PELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLG
VYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPA
RKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgcaaaaacatacgaagatatcgatgcacaaatacgtgaaattcaagta
aagaaggcaacactcgatgaaacacaaggagttggacttgactccacaggttactttgac
cgggatatatatggtggaagtgacagcagattttcaggatatttgacatctattgcaaca
aatgaacaagaagatgatgatgatgaggactcttcagcagcggcatttgagaaaaaacca
ggatatcatgcacctgttgcattgcttaatgacatccctcaatcatctgaacaatatgat
ccatttgctgaacatcgacctcagaaaattgcagaccgggaggacgaatataaaaagcat
agacgaacaatgatcatttctccagagcgccttgacccttttgcagatggaggcaagact
ccagatccaaaaacaaatgcacgaacatacacagatgttatgaaagagaagcagttaaga
aaggaacagtatgaaatccatcagcagatagcagaaaaggcaaaatctggtgatttaaag
gtagtcaatggatcctctgcttcagcatcatcacagccatcttcaaagcgtaaaagaaga
tgggatcaaacagctgaccaaactccagggtctacacctaagaagatttcaagctgggac
caagccgaggtcactcctggacacacaccttcattaagatgggatgagacccctggtcga
tcaaagggaaatgacacccctggggctactccaggctcaaagatctgggatcctactccc
agccatacaccttctggagcagctacaccaggtcgtggtgataccccaggccatgcaact
ccagggcatggaggtgcaacttccagtgcacgtaaaaacagatgggatgaaactccgaaa
acagaacgggatattcctggtcatggaagtgggtgggctgagactccacgtacagatcgt
ggtggagaatcaattggtgaaaccccaactcctggggcaagtaaaagaaagtctcgttgg
gatgaaactccagctagtcagatgggtggtagtactccggtactgacaccagggaaaact
ccaattggaacccctgctatgaatatggctactcctactccaggacacattatgagtatg
actcctgaacaacttcaagcatggcgttgggagcgagaaattgatgaaagaaatcgccca
ctttctgatgatgagttggatgccatgtttccagagggatataaggttctccccccacca
gcgggatatgtcccaatacgtaccccagcacgtaaactgacagcaactccaacacctttg
ggtggcttaactggttttcatatgcctgctgaagacaagacaatgaaaaatgtcagtgat
cagccatcgggaaatcttcctttccttaaaccagatgatattcagtactttgataaactg
ttggttgatgtggatgaatccactcttagtccagaagagcagaaggaaagaaaaataatg
aaactactgctgaaaattaagaatggtacacctccaatgagaaaggcagctctgcgccag
attacagataaagcgcgtgagtttggagctggacctttgttcaatcagatattaccattg
ctgatgtctccaacacttgaagaccaggaacgacatttacttgttaaagttattgatagg
atcttgtacaaacttgatgatttggttcgaccgtatgtacacaagattcttgtggttatt
gaacccttgctgattgatgaagactattatgccagagtagaaggtagagaaattatctct
aacttggctaaggctgctggtttagccactatgatttccacaatgagaccagatattgac
aacatggatgaatatgtccgtaacacaacagccagagcttttgcggtggttgcttctgca
cttggcattccgtccttgctccctttcttgaaagctgtttgtaagagcaaaaagtcatgg
caggcccgccacactggtattaagattgtgcagcagattgctatactgatgggttgtgct
atcttaccgcacttaagaagcttggttgaaatcattgaacatggattggttgatgaacag
cagaaagttcgtaccatcagtgctctggctatagctgctttagctgaagcagccacacct
tacggtattgagtcttttgattctgtgctaaaacctctctggaagggtatcagacagcac
agaggaaagggtctggctgcgttcttgaaagccattggctaccttatacctctcatggat
gctgaatatgcaaactactataccagagaagtgatgttgattttaatccgagagtttcag
tctcctgatgaagaaatgaaaaagattgttttaaaggtggtgaagcagtgttgtggtact
gatggtgtggaagcaaattacataaagacagaaattcttcccccatttttcaaacacttc
tggcagcatagaatggctttggacagaagaaactatagacagttggtggacactacagtt
gagcttgcaaataaagtgggagctgcagaaattatatctagaattgtggatgacctaaag
gatgaagctgagcaatacagaaaaatggtcatggaaaccattgagaaaataatgggcaac
cttggagctgctgacattgaccacaagcttgaggaacagttgattgatggcatcctttat
gcttttcaggagcagaccacagaggattcagtcatgttgaacggttttggtacagttgtg
aatgctcttggaaaaagagtgaaaccataccttccccagatttgtggtactgtgttgtgg
cgtttaaacaacaaatctgctaaagtaagacaacaggctgctgatttaatatctcgcact
gcagttgtcatgaaaacatgtcaagaggaaaaactaatgggacatttgggtgttgtgttg
tatgaatatcttggagaggagtatcctgaagtattgggaagcattttaggagccctaaag
gcaatagtcaacgttattggtatgcataaaatgactcctccaatcaaggatttgcttcca
agacttacacctattttgaaaaataggcatgagaaagtacaggagaactgcattgacctg
gttgggcgtatagctgataggggagcagaatatgtttcagcaagagagtggatgaggatt
tgttttgaacttttagaactgctaaaggctcataaaaaagcaatcaggagagccactgtg
aacacatttggctacattgctaaagctattggacctcatgatgtgcttgctacactgctt
aataacttaaaagtacaagaaaggcaaaaccgagtgtgtaccaccgttgcaatcgctatt
gttgcagaaacctgttcaccttttacagttctaccagcgctaatgaatgaatatagagtt
ccagaacttaatgttcagaacggtgtattaaagtctttgtctttccttttcgagtatatt
ggagaaatgggaaaagactatatctatgctgtaacacctctgcttgaagatgctttgatg
gatagagatcttgttcacagacagacagctagtgctgttgttcagcacatgtcccttgga
gtttatggttttggttgtgaagattctttaaatcaccttttaaattatgtatggcccaat
gtgtttgagacatctcctcatgtaatccaagcagtgatgggagcccttgaaggccttagg
gttgctattgggccatgccgaatgctgcaatattgcctacagggtctcttccatcctgcc
agaaaagtcagagatgtttactggaaaatatacaactctatatacattggatcacaagat
gctttgattgcccattatccccgtatctataatgatgagaagaatacttacattcgttac
gagcttgactacatcttataa
DBGET
integrated database retrieval system