Nocardioides panacis: KRR39_23310
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Entry
KRR39_23310 CDS
T08276
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
nps
Nocardioides panacis
Pathway
nps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nps00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
KRR39_23310
09124 Replication and repair
03420 Nucleotide excision repair
KRR39_23310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nps03021
]
KRR39_23310
03400 DNA repair and recombination proteins [BR:
nps03400
]
KRR39_23310
Enzymes [BR:
nps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KRR39_23310
Transcription machinery [BR:
nps03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
KRR39_23310
DNA repair and recombination proteins [BR:
nps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
KRR39_23310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QWZ08214
UniProt:
A0A975SZQ3
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All DBs
Position
complement(4766727..4768370)
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AA seq
547 aa
AA seq
DB search
MNDGPLIVQSDKTLLLEIDHERAQDCRKAIAPFAELERSPEHVHTYRLTPLGLWNARAAG
HDAEQVVDTLLAFSRYAVPHALLVDIAETMARYGRLRLDKHPVHGLVLTSTDRPVLEEVL
KAKKIAPMIGERLDEATVVVHPSERGNLKQALLKIGWPAEDFAGYVDGEAHAIELDQAGW
TLRSYQQEAAESFWHGGSGVVVLPCGAGKTIVGAAAMAHAKATTLILVTNTVSARQWKEE
LIRRTTLTEDEIGEYSGTKKEVRPVTIATYQVMTTRRKGVYAHLELFDAKDWGLVIYDEV
HLLPAPIFRMTADLQARRRIGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGYIAP
ADCVEVRVTLPESERFVYATAEPEERYRLAACTDAKTRLVEELVAKHRGEPTLVIGQYLD
QLDEIGERLDAPVIKGDTPVKERERLFNAFRHGELNLLVVSKVANFSVDLPSAAVAIQVS
GSFGSRQEEAQRLGRLLRPKEDKRSARFYAIVSRDTVDADFAQHRQRFLAEQGYAYRIVD
SDDIATA
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacggaccgctcatcgtccagtccgacaagaccctgctcctcgagatcgaccac
gagcgcgcccaggactgtcgcaaggcgatcgcgccgttcgccgagctcgagcgctccccc
gagcacgtgcacacctaccggctcacgccgctcggcctgtggaacgcgcgggccgccggc
cacgacgccgagcaggtcgtggacaccctgctggccttcagccggtacgccgtcccgcac
gccctgctcgtcgacatcgccgagacgatggcccgctacggccgactgcgcctcgacaag
caccccgtgcacggcctggtgctgaccagcaccgaccgcccggtgctcgaggaggtgctg
aaggccaagaagatcgccccgatgatcggcgagcggctcgacgaggcgacggtcgtcgta
cacccctcggagcgcggcaacctcaagcaggcgctgctgaagatcggctggcccgcagag
gacttcgcggggtacgtcgacggcgaggcgcacgccatcgagctcgaccaggccggctgg
acgctgcggtcctaccagcaggaggcggccgagtcgttctggcacggcggctccggggtg
gtggtgctgccctgcggcgccggcaagacgatcgtcggggcggcggcgatggcgcacgcc
aaggccacgacgctgatcctcgtgacgaacaccgtctcggcgcggcagtggaaggaggag
ctgatccgtcgcacgacgctgaccgaggacgagatcggcgagtactccggcaccaagaag
gaggtgcgcccggtcaccatcgcgacgtaccaggtgatgaccacgcgccggaagggcgtc
tacgcccacctcgagctgttcgacgccaaggactggggcctggtgatctacgacgaggtg
cacctgctgcccgcgccgatcttccggatgaccgccgacctgcaggcccgtcgccggatc
gggctgaccgccacgctgatccgcgaggacggccgcgagggagacgtgttctcgctgatc
ggcccgaagcggtacgacgccccctggaaggacatcgaggcgcagggctacatcgccccg
gccgactgcgtcgaggtgcgggtgacgctgcccgagagcgagcggttcgtctacgcgacg
gccgagcccgaggagcgctaccggctcgctgcctgcaccgacgcgaagacccgcctcgtc
gaggagctggtggccaagcaccgcggcgagccgaccctggtgatcggccagtacctcgac
cagctcgacgagatcggcgagcggctcgacgcccccgtcatcaagggcgacaccccggtc
aaggagcgcgagcggctgttcaacgcgttccggcacggcgagctgaacctgctcgtcgtc
tccaaggtcgccaacttctccgtggacctgccgtcggccgccgtcgcgatccaggtgtcc
gggtcgttcggctcccgccaggaggaggcccagcggctcggccggctgctgcgccccaag
gaggacaagcgctccgcacggttctacgcgatcgtgtcccgcgacaccgtcgacgcggac
ttcgcccagcaccggcagcgcttcctcgccgagcagggctacgcctaccggatcgtcgac
tccgacgacatcgccaccgcctga
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