Neodiprion pinetum (white pine sawfly): 124210851
Help
Entry
124210851 CDS
T08966
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124210851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124210851
03012 Translation factors [BR:
npt03012
]
124210851
Enzymes [BR:
npt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124210851
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124210851
Translation factors [BR:
npt03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124210851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
nSTAND3
AAA_22
ResIII
ATPase
NACHT
AAA_14
AAA_19
PhoH
Myosin_head
NPHP3_N
Sigma54_activat
NB-ARC
AAA_23
ABC_tran
ATPase_2
AAA_16
RsgA_GTPase
TsaE
Rad17
Motif
Other DBs
NCBI-GeneID:
124210851
NCBI-ProteinID:
XP_046465251
LinkDB
All DBs
Position
1:34715877..34722165
Genome browser
AA seq
985 aa
AA seq
DB search
MSYRHGRGVRNAYGSYRQRENSDDINDGSSYNAGNRQSRGSAQGSRGRGRGGHPPWLKGK
EIGLYYKKKAQSSQQPTHAIRLNPHTERKIKNLLESMPNTNFRPASGTGMCDGIDSKLKA
RYDHINDSHFKKNFLEIVSGDIQQNLTKSMLAKSKLVQNDTYDKRAIEEHKERVASPGYQ
KMLKFREKLPAFKMRRQVLELIEKNQVVVISGETGCGKTTQVAQFILDDQIERGNGSVTK
IICTQPRRISAISVAERVATERAERLGCSVGFQIRLEKELCRDYASILFCTTGMLLQFLH
SNPALTDWSHLILDEIHERSTESDFIITLLKQIIPRRPNLKVILMSATLNSDQFSKYYNN
CPNIHIPGFTYPVQEYYLEDVLQFTRFKFPPPPEMPNNHRKHMKRYKNQQKKSDDFLDFI
QPYLRHIESERKYPQFVIDQLRNPVSEDLSLELIAELVHFICTNEGPGAILIFLPGMTDI
TKLTRMLLESGEYPSSRFIVYPLHSRLPTVDQKLVFERPPDRVRKIIIATSIAETSITIE
DVVFVIDSGKMKLNKFDTDNNIETLLPEPVSLANAKQRRGRAGRVQPGKCYHLYTKAREM
TMDEYPLPEMLRTRLEQVILQAKILQLGKITPFLASVIDPPNAKAVELSLQLLMTLNALD
EDEQLTPLGYHLAKIPLDPRTGKMIILGAIFSCVEPVFSIAASLTYKDAFYCPLGKEAEA
QKRKLELGLGQYSDHIALAEALRRFEEAKTRGSPGFFCRQYFLSWNTLKLLTDMKNQFAK
YLCEMNFLHSANPNDERANKNSNNLALVKALVCAGLFPNVAIVKSVRRHGASVVTPQDGK
VKLHPSSINEKCQSFPSPYLVYFTKQLSSAIYLHDTTSISPMGLIFAGPNSKIGEQNGKC
VMALPGALSFLCEPETAFIVQKLRAKLEWLLGYKITHPGTIKWDSDEGAVLKGMIELVSQ
GDEEMGLESRTYHVGFANETYSDSD
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatcgacatggacgcggagtaagaaatgcatacggttcatatcgtcaaagagag
aattccgacgatattaatgatggttccagctacaatgcaggaaatagacagagtcgcggg
tcagctcaggggagccgtggtagaggtcgcggcggtcatcccccatggctaaaaggaaaa
gagatcgggctttattacaagaaaaaagcacagagttcgcagcaaccgactcatgccatt
agattaaatccgcacactgaaagaaaaattaaaaacctgttagaatcgatgccaaatacg
aatttcaggccagcttctgggacgggaatgtgcgatggcattgatagcaagcttaaggct
aggtacgatcacataaatgactcacatttcaaaaaaaatttcctggaaattgtgtctggt
gatattcagcaaaatcttacaaagtctatgcttgctaaatcaaagcttgtccaaaacgat
acttacgacaagagagcaattgaggaacacaaagaaagggtcgcgtcgcctggttatcaa
aaaatgttaaagttcagggaaaaattacctgctttcaaaatgaggcggcaagtcttggag
ctcatagaaaagaatcaagttgtagtgataagtggtgaaactggttgtggcaaaacgacg
caggttgcccaattcattctagatgatcaaatcgagagaggaaatggaagtgtcacaaaa
attatttgtactcaaccaaggagaatttcagctatatccgtagctgaacgagtcgctaca
gagagagcagaaaggcttggatgttccgttggctttcaaattagacttgagaaagagttg
tgcagagattatgcgagcatattgttctgtactacaggcatgttattacaatttctgcat
agcaacccagcgttaactgattggtctcatttaattcttgatgaaattcatgaaaggagc
acggaaagtgactttattattacattgttgaaacagatcattccacggagacccaatctc
aaagtgattttgatgagcgctactctgaattctgaccagttttcaaagtattacaataac
tgtccgaatattcatataccaggttttacatatcctgttcaagaatattatttggaagac
gtactccagtttactcgtttcaaattccctcctcctcctgagatgccaaataatcacaga
aagcacatgaagaggtataagaatcagcaaaaaaaatctgatgatttcttagattttatt
caaccatatttgcggcatatcgagtctgagagaaaatatccgcaatttgttatcgatcaa
cttagaaatccagtgagtgaagatttgtcacttgaacttattgcggaactggttcacttt
atatgtacaaacgaaggtcctggtgctattttgatatttttaccaggaatgactgatatt
acaaagttaacgagaatgctgcttgaatctggagaatacccatcaagtaggtttatagtt
taccctttgcattcacgcctgccaacagtggatcagaaacttgtatttgaaagacctccg
gatcgcgtgagaaagataataatagcaacatcaattgctgaaacgtccataacaatagaa
gatgttgtgtttgttatcgattctggtaaaatgaaactgaataaatttgacaccgataac
aatatagaaacgctattgccagagcctgtctctttggccaatgccaaacaaaggcgtgga
agggctggaagagttcaacctggcaaatgttatcatttatatacaaaggccagagaaatg
acaatggacgagtatcccttaccagaaatgttacgaacgagattagaacaagttatactt
caggcgaaaattttacagcttggtaaaataacgccgtttttagcaagcgtaatagatcct
ccaaatgcaaaagctgtcgaactttctcttcagctactcatgactctgaatgcccttgat
gaagacgaacagttaacacctctaggctatcatttggcaaaaataccacttgaccccaga
acgggaaaaatgataatattgggagcaattttttcatgtgtcgagccagtattttcaata
gctgccagtctgacttacaaggacgcgttttattgtcctttggggaaagaggctgaggct
caaaaacggaaattagaactaggtttaggtcagtacagcgatcacattgcacttgcagag
gctcttaggcggtttgaagaagcaaaaaccagagggtctccgggattcttttgtagacag
tattttctttcatggaacactctcaagcttttaacagacatgaagaatcagttcgccaag
tatctgtgtgagatgaactttcttcacagtgcaaatcctaatgatgaacgtgcgaacaaa
aattcaaataacttggcactggttaaagcgctggtttgtgccggacttttcccgaacgtt
gctattgttaagtcagtcagaagacacggtgcaagcgttgttactccccaagacggcaaa
gtcaagctgcacccgtcaagtataaatgaaaaatgtcaatcctttcccagcccttatttg
gtttacttcaccaagcagttatcctcagctatttatctacatgacactacgagtattagt
cctatgggtttgatattcgctggtccaaatagtaaaataggagaacagaatggaaaatgt
gttatggcactaccaggtgccctcagctttttatgtgaaccggaaactgcgttcattgtt
cagaaattacgcgctaagttggaatggctgctgggatataaaatcactcacccagggacg
ataaagtgggacagtgacgaaggggcggtcttgaaaggtatgatcgagcttgtatcgcaa
ggtgatgaggagatggggctagaatctcgtacgtaccacgtgggatttgccaatgagaca
tactcagattctgattga
DBGET
integrated database retrieval system
