KEGG   Neodiprion pinetum (white pine sawfly): 124211279
Entry
124211279         CDS       T08966                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
npt  Neodiprion pinetum (white pine sawfly)
Pathway
npt03018  RNA degradation
npt03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:npt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124211279
  09123 Folding, sorting and degradation
   03018 RNA degradation
    124211279
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:npt03019]
    124211279
   03041 Spliceosome [BR:npt03041]
    124211279
Messenger RNA biogenesis [BR:npt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     124211279
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     124211279
Spliceosome [BR:npt03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    124211279
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 124211279
NCBI-ProteinID: XP_046466133
LinkDB
Position
2:complement(34120278..34121590)
AA seq 149 aa
MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEVIDMVKEDVQMKSRGRGEMKGRGGQNQRGGRGGGGGGGGGGGRGTF
GGRGGRGPAPLGRGGNQGGNKPQNKPRTK
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctaccgctttcattgttgagaacagcacaaaatcatcctatgctcgtcgaactcaaa
aatggagaaacatacaatggacacttggttagctgtgataattggatgaacattaatctc
agagaagttatctgcacatccagggatggtgacaaattttggaggatgccagaatgctac
attcgtggtagtaccattaagtatcttagaattccagatgaagttatagacatggttaaa
gaagacgttcaaatgaaatcgaggggacgaggtgaaatgaaaggacgtggcggtcaaaat
caacgaggcggtcgaggcggaggcggaggtggaggtggaggtggtggcagaggcactttc
ggaggacgtgggggaagaggccctgcgcctttaggtcgaggtggtaatcaaggtggcaac
aaaccccaaaacaaaccaagaaccaaataa

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